Scott_Fraley_Rangamani_YAP_TAZ_model_2021(...
|
prangamani
|
None
|
02/13/21 |
SA 314 2xD Fig 5,...
|
Fully-Implicit Finite Volum...
|
"SA 314 2xD Fig 5,6"
- R 20 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 415 2xD Fig 5,6"
- R 23 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 490 2xD Fig 5,6"
- R 25 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 250 2xD Fig 5,6"
- R 18 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 200 2xD Fig 5,6"
- R 16 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Compartmental model"
- Parameter scan over stiffness
|
Combined Stiff Solver (IDA/CVODE)
|
|
Scott_Fraley_Rangamani_YAP_TAZ_model_2021 ...
|
prangamani
|
None
|
02/13/21 |
SA 314 2xD figure...
|
Fully-Implicit Finite Volum...
|
"SA 314 2xD figure 5,6"
- R 20 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" R10 2D figure 4"
- R 10 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 490 2xD figure 5,6"
- R 25 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 415 2xD figure 5,6"
- R 23 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 250 2xD figure 5,6"
- R 18 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R13 2D figure 4"
- R 13 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 314 3D figure 5,6"
- New SA 314 All 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 415 3D figure 5,6"
- New SA 415 All 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 490 3D figure 5,6"
- New SA 490 All 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 250 3D figure 5,6"
- New SA 250All 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 200 3D figure 5,6"
- New SA 200 All 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"SA 200 2xD figure 5,6"
- R 16 Bot 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R15 LD 0.5 Figure 7"
- Copy of Simulation88
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Compartmental model"
- Parameter scan over stiffness
|
Combined Stiff Solver (IDA/CVODE)
|
"Compartmental model"
- Parameter scan over cytosolic stiffness varying exponent
|
Combined Stiff Solver (IDA/CVODE)
|
"Compartmental model"
- Parameter scan over cytosolic stiffness varying p
|
Combined Stiff Solver (IDA/CVODE)
|
"R15LD 1.5Figure 7"
- Simulation113
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R13 LD 1.5 Figure 7"
- Simulation114
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R13 LD 0.5 Figure 7"
- Simulation117
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R16 LD 1.5Figure 7"
- Simulation126
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R16 LD 1.5Figure 7"
- Copy of Simulation126
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R16 LD 0.5 Figure 7"
- Simulation131
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R10 Bottom wide Figure 7"
- Simulation135
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R10 LD 0.5 Figure 7"
- Simulation138
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R15 3D Figure 3, 4, and S7"
- R 15 All 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R15 3D Figure 3, 4, and S7"
- R 15 All 0.1,5.7,70E6 with different FAK diffusion
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R13 3D figure 4"
- R 13 All 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R10 3D figure 4"
- R 10 All 0.1,5.7,70E6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R15 2D Fig 3, 4, and S7"
- R15 2D 0.1, 5.7, 7e6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R15 2D Fig 3, 4, and S7"
- R15 2D 7e6 with different FAK diffusion
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R16 LD 1Figure 7"
- Simulation22
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R-25 FAK diffusion variation 3D substrate stiffness Figure S7"
- R 25 3D 70E6 FAK diffusion 0.1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R-25 FAK diffusion variation 3D substrate stiffness Figure S7"
- R 25 3D 70E6 FAK diffusion 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R-25 FAK diffusion variation 3D substrate stiffness Figure S7"
- R 25 3D 70E6 FAK diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R-25 FAK diffusion variation 2D substrate stiffness Fig S7"
- R 25 2D varying FAK diffusion 0.1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R-25 FAK diffusion variation 2D substrate stiffness Fig S7"
- R 25 2D varying FAK diffusion 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R-25 FAK diffusion variation 2D substrate stiffness Fig S7"
- R 25 2D varying FAK diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Energy-production-pathway-reduced-model-01...
|
nasrin
|
34396153
|
02/24/21 |
Tubular...
|
Fully-Implicit Finite Volum...
|
"Tubular"
- Simulation24
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"No Cristae"
- Simulation86
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"No Cristae"
- Simulation87
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Lamellar"
- Simulation166
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Lamellar"
- Copy of Simulation166
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"2D_15_Cristae"
- Simulation233
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"2D_15_Cristae"
- Simulation234
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"2D_5_Cristae"
- Simulation233_1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"2D_5_Cristae"
- Simulation234_1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
NucleationMechanism
|
AaronRosenbloom
|
34509503
|
10/14/21 |
Simulations of Se...
|
Combined Stiff Solver (IDA/...
|
"Simulations of Sept and McCammon and this paper"
- Sept and McCammon 2.5 uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- Sept and McCammon 10 uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- This paper 1 uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- This paper 2.5 uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- This paper 10 uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- 7.5% pyrenyl-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- 15% pyrenyl-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- Sept and McCammon 1 uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- 25% pyrenyl-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- 50% pyrenyl-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- 75% pyrenyl-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Simulations of Sept and McCammon and this paper"
- 100% pyrenyl-actin
|
Combined Stiff Solver (IDA/CVODE)
|
|
SpermCalcium
|
Juliajessica
|
34360784
|
07/24/21 |
Application0...
|
Fully-Implicit Finite Volum...
|
"Application0"
- Calcium diffusionvariationosc
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Kerbai_PLoSone_2021_teardrop_polarization_...
|
KerbaicBITE
|
33735291
|
04/02/21 |
real cell...
|
Fully-Implicit Finite Volum...
|
"real cell"
- simulation3
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"real cell"
- simulation1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"real cell"
- simulation2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Kerbai_PLoSone_2021_teardrop_polarization_...
|
KerbaicBITE
|
33735291
|
03/25/21 |
real cell...
|
Fully-Implicit Finite Volum...
|
"real cell"
- Simulation1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"real cell"
- Simulation2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
5HT7_Jang_2020
|
wojang
|
33199589
|
09/16/20 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Histamine-RhoA Model_Final3
|
jzz002
|
32881857
|
03/06/20 |
Application1...
|
Combined Stiff Solver (IDA/...
|
"Application1"
- Simulation 1
|
Combined Stiff Solver (IDA/CVODE)
|
|
Histamine-RhoA Model_FInal
|
jzz002
|
32881857
|
04/03/20 |
Application1...
|
Combined Stiff Solver (IDA/...
|
"Application1"
- Simulation 1
|
Combined Stiff Solver (IDA/CVODE)
|
|
Nosbisch chemotaxis 2020
|
jnosbis
|
32255775
|
01/30/20 |
Symmetric Geometr...
|
Fully-Implicit Finite Volum...
|
"Symmetric Geometry"
- Fig 2A: PFL 1 scan 0% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2A: PFL 1 scan 3% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2A: PFL 1 scan 10% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2A: PFL 1 scan 30% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2A: PFL 1 scan 67% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2B: PFL 1 scan without MARCKS 0% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2B: PFL 1 scan without MARCKS 3% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2B: PFL 1 scan without MARCKS 10% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2B: PFL 1 scan without MARCKS 30% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 2B: PFL 1 scan without MARCKS 67% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3A: M and Mp diffusivity scan x 0.1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3A: M and Mp diffusivity scan x 0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3A: M and Mp diffusivity scan x 0.5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3A: M and Mp diffusivity scan x 2.0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3A: M and Mp diffusivity scan x 5.0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3A: M and Mp diffusivity scan x 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3B: pT and mT diffusivity scan x 0.1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3B: pT and mT diffusivity scan x 0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3B: pT and mT diffusivity scan x 0.5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3B: pT and mT diffusivity scan x 2.0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3B: pT and mT diffusivity scan x 5.0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 3B: pT and mT diffusivity scan x 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 5B: 0.3 x kDAGK scan 10% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 5B: 3.0 x kDAGK scan 10% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 5D: 3.0 x kDAGK scan 3% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 5E: Variation of DAG and PA scan x 0.1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 5E: Variation of DAG and PA scan x 0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 5E: Variation of DAG and PA scan x 0.5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 6A: PFL 2 + MARCKS
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 6B: PFL 1+ PFL 2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig 6C: PFL 1+ PFL 2 + MARCKS
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kon,e
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans koff,e
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans epsilon
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans KPA
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans khyd,PLC
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kpm
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kdpm
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kbasal,dp
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kDAGK
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kPAP
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kon,c
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans koff,c
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kdpc
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans kpc
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S4: Parameter scans Vsynth,dp
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S5: PFL 2 + MARCKS, kDAGK
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S5: PFL 2 + MARCKS, KPLD
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S5: PFL 1 + PFL 2, kDAGK
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S5: PFL 1 + PFL 2, KPA
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S5: PFL 1 + PFL 2, KPLD
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S5: PFL 1 + PFL 2 + MARCKS, kDAGK
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S5: PFL 1 + PFL 2 + MARCKS, KPA
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Symmetric Geometry"
- Fig S5: PFL 1 + PFL 2 + MARCKS, KPLD
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4B: PFL 1 scan
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4C: M and Mp diffusivity scan x 0.1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4C: M and Mp diffusivity scan x 0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4C: M and Mp diffusivity scan x 0.5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4C: M and Mp diffusivity scan x 2.0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4C: M and Mp diffusivity scan x 5.0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4C: M and Mp diffusivity scan x 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4D: Back end blunted scan 3% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4D: Back end blunted scan 10% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4D: Back end blunted scan 30% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4D: Back end blunted scan 67% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4D: Front end blunted scan 3% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4D: Front end blunted scan 10% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4D: Front end blunted scan 30% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Asymmetric Geometry"
- Fig 4D: Front end blunted scan 67% gradient
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
PI cycle Figure 4 & S4
|
Myeong
|
33186442
|
09/18/20 |
modeling PI cycle...
|
Combined Stiff Solver (IDA/...
|
"modeling PI cycle"
- 4K acceleration backbone
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- 4K acceleration InsP3_LIBRA
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- 5K acceleration backbone
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- 4K acceleration DAG_C1A
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- 5K acceleration InsP3_LIBRA
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- 5K acceleration DAG_C1A
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- PLC decrease DAG_C1A
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- PLC decrease backbone
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- PLC decrease InsP3_LIBRA
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- 4P and 5P decrease backbone
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- 4P and 5P decrease InsP3_LIBRA
|
Combined Stiff Solver (IDA/CVODE)
|
"modeling PI cycle"
- 4P and 5P decrease DAG_C1A
|
Combined Stiff Solver (IDA/CVODE)
|
|
PI cycle Figure 6, 7 & S9
|
Myeong
|
33186442
|
09/18/20 |
Modeling PI cycle...
|
Combined Stiff Solver (IDA/...
|
"Modeling PI cycle"
- S Figure 9D. InsP3_LIBRA
|
Combined Stiff Solver (IDA/CVODE)
|
"Modeling PI cycle"
- S Figure 9A. PtdIns4P_M_P4M
|
Combined Stiff Solver (IDA/CVODE)
|
"Modeling PI cycle"
- Backbone Figure 7
|
Combined Stiff Solver (IDA/CVODE)
|
"Modeling PI cycle"
- S Figure 9E. DAG_C1A
|
Combined Stiff Solver (IDA/CVODE)
|
"Modeling PI cycle"
- S Figure 9C. PH domain
|
Combined Stiff Solver (IDA/CVODE)
|
"Modeling PI cycle"
- S Figure 9B. FAPP1
|
Combined Stiff Solver (IDA/CVODE)
|
"Modeling PI cycle"
- Figure 6G. PtdIns4P_M_P4M Sac1
|
Combined Stiff Solver (IDA/CVODE)
|
"Modeling PI cycle"
- Figure 6F. PH domain Sac1
|
Combined Stiff Solver (IDA/CVODE)
|
|
Minimum Stochastic Model BetaCell
|
mgetz
|
33201801
|
07/30/20 |
Copy of Applicati...
|
Gibson (Next Reaction Stoch...
|
"Copy of Application0 1"
- done 1 2 1
|
Gibson (Next Reaction Stochastic Method)
|
"Copy of Application0 1"
- double done 1 2 1
|
Gibson (Next Reaction Stochastic Method)
|
|
Monkeyflower_pigmentation_v2
|
colreeze
|
32155414
|
11/13/19 |
Pattern_formation...
|
Fully-Implicit Finite Volum...
|
"Pattern_formation"
- WT
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.09
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.06
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.15
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.18
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.185
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.19
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.21
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_RNAi_0.24
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- NEGAN_RNAi_0.06
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- NEGAN_RNAi_0.09
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- NEGAN_RNAi_0.1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- NEGAN_RNAi_0.11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- NEGAN_RNAi_0.12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- NEGAN_RNAi_0.15
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- NEGAN_RNAi_0.18
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_OE_0.01
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_OE_0.05
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_OE_0.06
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_OE_0.07
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_OE_0.08
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_OE_0.09
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Pattern_formation"
- RTO_OE_0.1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
A predictive computational model reveals t...
|
mgetz
|
31017840
|
04/30/19 |
unnamed...
|
Combined Stiff Solver (IDA/...
|
"unnamed"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"unnamed"
- GIV+EGFR variation
|
Combined Stiff Solver (IDA/CVODE)
|
|
SH2 biosensor
|
jmhaugh
|
31164479
|
05/19/15 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- Complex internalizes at turnover rate; vary koff and [SH2] 1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Vary EGF, no SH2
|
Combined Stiff Solver (IDA/CVODE)
|
|
Surve_et_al_RAF1
|
pmyers1995
|
30586319
|
01/03/19 |
+sorafenib...
|
Combined Stiff Solver (IDA/...
|
"+sorafenib"
- Fitted binding
|
Combined Stiff Solver (IDA/CVODE)
|
"-sorafenib"
- 60 min
|
Combined Stiff Solver (IDA/CVODE)
|
"-sorafenib"
- Fitted binding rates
|
Combined Stiff Solver (IDA/CVODE)
|
"+sorafenib after 60 min EGF pretreatment"
- 60 min EGF pretreat
|
Combined Stiff Solver (IDA/CVODE)
|
"+sorafenib after 15 min EGF pretreatment"
- 15 min EGF pretreat
|
Combined Stiff Solver (IDA/CVODE)
|
"+sorafenib after 30 min EGF pretreatment"
- 30 min EGF pretreat
|
Combined Stiff Solver (IDA/CVODE)
|
"+sorafenib after 5 min EGF pretreatment"
- 5 min EGF pretreat
|
Combined Stiff Solver (IDA/CVODE)
|
"const. active Ras-GTP, -sorafenib"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"const. active Ras-GTP, -sorafenib"
- 10x Ras
|
Combined Stiff Solver (IDA/CVODE)
|
|
Kruse_Kohout_Hille_CiVSP
|
mkruse
|
30622132
|
12/04/18 |
modelinOct2010...
|
Combined Stiff Solver (IDA/...
|
"modelinOct2010"
- DFH Figures 4D and 5B "Oxo" and 6F
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figures 4C and 5A "Oxo"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 5A "UTP"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 5B "UTP"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 6B "Oxo"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 6B pipette dialysis
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 6E
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 7B
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- VSP
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 8C
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 8D "4K at resting rate"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 8D "4K turned off"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 1E
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 1F
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figures 4G and 4H
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 6B
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figures 6C and 6D
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8A except Fura, Libra, C1
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8A Fura
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8A Libra, C1
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8B except Fura, Libra, C1
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8C except Fura, Libra, C1
|
Combined Stiff Solver (IDA/CVODE)
|
|
Macrophage Cargo Capacity
|
awillmer
|
None
|
05/30/19 |
Matching w/ Matla...
|
Combined Stiff Solver (IDA/...
|
"Matching w/ Matlab data"
- Amiodarone
|
Combined Stiff Solver (IDA/CVODE)
|
"Matching w/ Matlab data"
- Clofazimine
|
Combined Stiff Solver (IDA/CVODE)
|
"Matching w/ Matlab data"
- Bupivacaine
|
Combined Stiff Solver (IDA/CVODE)
|
"Matching w/ Matlab data"
- Chlorprothixene
|
Combined Stiff Solver (IDA/CVODE)
|
"Matching w/ Matlab data"
- Lidocaine
|
Combined Stiff Solver (IDA/CVODE)
|
"Matching w/ Matlab data"
- Celiprolol
|
Combined Stiff Solver (IDA/CVODE)
|
|
Mohan chemotaxis 2017
|
jnosbis
|
28700916
|
06/12/17 |
Relative_gradient...
|
Fully-Implicit Finite Volum...
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=0.03, kdpm=0.01, kpc1=0.01, kpc2=1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=1, kdpm=1, kpc1=scan, kpc2=scan
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=1, kdpm=1, kpc1=1, kpc2=0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=1, kdpm=1, kpc1=0.01, kpc2=1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=1, kdpm=1, kpc1=1, kpc2=0, DM=scan, DMp=scan
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=1, kdpm=1, kpc1=1, kpc2=0, konm=0, koffm=0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=1, kdpm=1, kpc1=0.01, kpc2=1, konm=0, koffm=0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=1, kdpm=1, kpc1=scan, kpc2=scan, konm=0, koffm=0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 3
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 4
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 7
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 14
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 15
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 16
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 17
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 18
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 19
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 20
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 21
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 22
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 23
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 24
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_p67"
- rel_grad=0.67, Lmid=3e-5, kpm=scan, kdpm=scan, kpc1=1, kpc2=0, 25
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Relative_gradient_0"
- rel_grad=0, Lmid=3e-5, kpm=0.03, kdpm=0.01, kpc1=0.01, kpc2=1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" Relative_gradient_p1"
- rel_grad=0.1, Lmid=3e-5, kpm=1, kdpm=1, kpc1=1, kpc2=0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" Relative_gradient_p1"
- rel_grad=0.1, Lmid=3e-5, kpm=1, kdpm=1, kpc1=0.01, kpc2=1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" Relative_gradient_p1"
- rel_grad=0.1, Lmid=3e-5, kpm=0.03, kdpm=0.01, kpc1=0.01, kpc2=1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" Relative_gradient_p1"
- rel_grad=0.1, Lmid=3e-5, kpm=1, kdpm=1, kpc1=1, kpc2=0, konm=0, koffm=0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" Relative_gradient_p1"
- rel_grad=0.1, Lmid=3e-5, kpm=1, kdpm=1, kpc1=0.01, kpc2=1, konm=0, koffm=0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" Relative_gradient_p1"
- rel_grad=0.1, Lmid=3e-5, kpm=1, kdpm=1, kpc1=scan, kpc2=scan, konm=0, koffm=0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" Relative_gradient_p3"
- rel_grad=0.3, Lmid=3e-5, kpm=0.03, kdpm=0.01, kpc1=0.01, kpc2=1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Yeast 3D_FRAP
|
Wasim
|
29205883
|
01/31/18 |
01_06_2017...
|
Fully-Implicit Finite Volum...
|
"01_06_2017"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"01_06_2017"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Falkenberg_PodocyteStability
|
falkenbe
|
28301477
|
08/16/16 |
non-spatial...
|
Combined Stiff Solver (IDA/...
|
"non-spatial"
- high alpha2, followed by high alpha
|
Combined Stiff Solver (IDA/CVODE)
|
"non-spatial"
- high alpha2 followed by higher alpha
|
Combined Stiff Solver (IDA/CVODE)
|
"non-spatial"
- low beta2 followed by highr alpha
|
Combined Stiff Solver (IDA/CVODE)
|
"extra: simple test geometry. "few fingers""
- stable - test localization
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. "few fingers""
- Copy of stable - test localization
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. "few fingers""
- Copy of Copy of stable - test localization
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: generate initial condition; full geometry,no LocCorr"
- good mesh (GM0): check loc
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: generate initial condition; full geometry,no LocCorr"
- GM0: try single stable point
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: generate initial condition; full geometry,no LocCorr"
- short, to check details
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: generate initial condition; full geometry,no LocCorr"
- My19, increase alpha z>3.5; tmax=200
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: generate initial condition; full geometry,no LocCorr"
- My19, increase alpha z>3.5; (forgot coefAlp1!!) - almost SS, will use as IC
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: generate initial condition; full geometry,no LocCorr"
- Copy of My19, increase alpha z>3.5;
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: generate initial condition; full geometry,no LocCorr"
- Copy of My19, increase alpha z>3.5; change ic
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: smaller pert region"
- My19, increase alpha (7>z>13)&&(x>15);
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: smaller pert region"
- Copy of My19, increase alpha (7>z>13)&&(x>15);
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: smaller pert region"
- Copy of My19, increase alpha (7>z>13)&&(x>15); 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: smaller pert region"
- Copy of My19, increase alpha (7>z>13)&&(x>15); 1, change ic
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: smaller pert region"
- Copy of Copy of My19, increase alpha (7>z>13)&&(x>15); - later trigger
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: smaller pert region"
- Copy of Copy of Copy of My19, increase alpha (7>z>13)&&(x>15); - later trigger
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: uniform"
- testloc
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: uniform"
- peak in alpha
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: uniform"
- change ic
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: uniform"
- triggger at 800
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: tests, full geometry, no LocCorr: uniform"
- change ic, tr 800
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- delay 200
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- delay 40
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- delay 500 - recovered
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- low beta2 - delay 200
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- low beta2 - delay 40
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- low beta2 - delay 500 - recovered
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (a) delay3000 (st)-(p5)-(p6): still OK
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (b) low beta2 - delay 2500 (st)-(p0)-(p4): too late
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (b) low beta2 - delay 1500 (st)-(p0)-(p4): dt2=2500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (b) low beta2 - delay 2000 (st)-(p0)-(p4): dt2=3000
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (a) delay 4000 (st)-(p5)-(p6):
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (a) delay 6000 (st)-(p5)-(p6):
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- damage: p5 (IIA) ; recover delay3000
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- damage: p5 (IIA) ; recover delay4500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- damage: p0 (IIB) ; recover delay 500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- damage: p0 (IIB) ; recover delay 1500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (Ia) delay3000 (st)-(p5)-(p7)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (Ia) delay4500 (st)-(p5)-(p7)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (Ib) delay 500 (st)-(p0)-(p3)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: simple test geometry. few fingers: uniform, pert n fix"
- (Ib) delay 1500 (st)-(p0)-(p3)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"non-spatial"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"extra: test, import ic: of few fingers: uniform, pert n fix"
- try to copy ic
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- keep extending to SS
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (a) delay3000 - Figure 3
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (a) delay4500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (Ia) delay3000
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (Ia) delay4500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (IIa) delay3000
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (IIa) delay4500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (b) delay500 - Figure6 ( i, j)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (b) delay1500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (Ib) delay500 - Figure 6 (f,g)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (Ib) delay1500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (IIb) delay500 - Figure 6 (d, e)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (IIb) delay1500
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figures 3 and 6; with SS ic: full geometry,no LocCorr"
- (a) delay3000 -fast diffusion G
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: with SS ic: full geometry,no LocCorr; perturb alpha(x,z)"
- keep alpha=0.32+(1+0.1*(Sin(x/2...))
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: with SS ic: full geometry,no LocCorr; perturb alpha(x,z)"
- keep alpha=0.32+(1+0.5*(Sin(x/2...)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: with SS ic: full geometry,no LocCorr; perturb alpha(x,z)"
- keep alpha=0.32+(1 - 0.5*(Sin(x/2...))
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: variation of Fig.5. with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t)"
- -13<z<-7, 7>x>10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: with SS ic: full geometry,no LocCorr; perturb alpha(r)"
- amplitude (1+0.1exp(-r/30))
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: with SS ic: full geometry,no LocCorr; perturb alpha(r)"
- amplitude (1+0.5 exp(-r/30))
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: with SS ic: full geometry,no LocCorr; perturb alpha(r)"
- amplitude (1+0.75 exp(-r/30))
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: with SS ic: full geometry,no LocCorr; perturb alpha(r)"
- amplitude (1+1 exp(-r/30))
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: with SS ic: full geometry,no LocCorr; perturb alpha(r)"
- amplitude (1-0.5 exp(-r/30))
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: variation of Fig.5. with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t), region1"
- -13<z < - 6.6, 7.0<x < 10.0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: variation of Fig.5. with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t), region1"
- -13<z < - 6.6, 7.0<x < 10.0 (weaker stim)
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"extra: variation of Fig5. with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t), region 2"
- -12.8<z<-8, 1.5>x>3.5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figure 5 and Movie2. with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t), region 3"
- Simulation3
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figure 5 and Movie2. with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t), region 3"
- slower diff Ga: 5um2/s, as in BJ 2008, 95:1627-1638; Biophys. J. 75:2070¿2078
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Figure 5 and Movie2. with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t), region 3"
- faster diff Ga: 20um2/s
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Movie3 (variation of Fig. 5). with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t), region 4"
- Simulation6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Movie3 (variation of Fig. 5). with SS ic: full geometry,no LocCorr; perturb alpha(x,z,t), region 4"
- weaker pert
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Jung_PNAS_2017_BiasedM1R_Figure4
|
jsr007
|
28652372
|
01/08/18 |
Deterministic...
|
Combined Stiff Solver (IDA/...
|
"Deterministic"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Jung_PNAS_2017_wildtypeM1R_figure5
|
jsr007
|
28652372
|
01/08/18 |
Deterministic...
|
Combined Stiff Solver (IDA/...
|
"Deterministic"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Dreyer_2017_AIMS Biophysics
|
idreyer
|
None
|
08/29/17 |
Channel_test...
|
Combined Stiff Solver (IDA/...
|
"Channel_test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
spatial protection test- two way competiti...
|
jjadwin
|
29162725
|
01/04/18 |
Application2...
|
Combined Stiff Solver (IDA/...
|
"Application2"
- Simulation1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Copy of Simulation1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Simulation2
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Simulation3
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Copy of Simulation3
|
Combined Stiff Solver (IDA/CVODE)
|
|
spatial protection test- no flux two way c...
|
jjadwin
|
29162725
|
01/04/18 |
Application2...
|
Combined Stiff Solver (IDA/...
|
"Application2"
- Copy of Simulation1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Simulation1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Simulation2
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Simulation3
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Simulation4
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Copy of Simulation4
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"Application2"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Wittek_et_al_JIntegrPlantBiol_2017_Phloem ...
|
idreyer
|
28296205
|
08/29/17 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- A, slope_ZmSUT1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- standard condition
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- D, slope_UmSRT1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- G, slope_BG_p
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- K, slope_BG_f
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- V0_p, Vrev_BG_p
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- V0_f, Vrev_BG_f
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- H_apo
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras-Diffusional Study-250xPDEtest4
|
bboras
|
27409243
|
08/06/15 |
Correct PDE conc....
|
Fully-Implicit Finite Volum...
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 360000 elements
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 75
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 300
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation6
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation7
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation12
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"ode"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras-Diffusional Study-1000xPDEtest4
|
bboras
|
27409243
|
08/06/15 |
Correct PDE conc....
|
Fully-Implicit Finite Volum...
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 75
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 300
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation6
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation7
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation12
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"ode"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 360000 elements
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Boras-Diffusional Study No geometry1x larg...
|
bboras
|
27409243
|
08/04/15 |
Application0...
|
Fully-Implicit Finite Volum...
|
"Application0"
- Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Application0"
- Copy of Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Boras-Diffusional Study No geometry10x lar...
|
bboras
|
27409243
|
08/04/15 |
Application0...
|
Fully-Implicit Finite Volum...
|
"Application0"
- Copy of Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Application0"
- Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Boras-Diffusional Study-25xPDEtest4
|
bboras
|
27409243
|
08/03/15 |
Correct PDE conc....
|
Fully-Implicit Finite Volum...
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 75
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 300
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 360000 elements
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation6
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation7
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation12
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"ode"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras-Diffusional Study-100xPDEtest7
|
bboras
|
27409243
|
08/03/15 |
Correct PDE conc....
|
Fully-Implicit Finite Volum...
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 360000 elements
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 75
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 300
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation6
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation7
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation12
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"ode"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras-Diffusional Study-10xPDEtest5
|
bboras
|
27409243
|
07/31/15 |
Correct PDE conc....
|
Fully-Implicit Finite Volum...
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 75
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 300
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 360000 elements
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation6
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation7
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation12
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"ode"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras-Diffusional Study-100xPDEtest5
|
bboras
|
27409243
|
07/31/15 |
Correct PDE conc....
|
Fully-Implicit Finite Volum...
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 360000 elements
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 75
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 300
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation6
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation7
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation12
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"ode"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras-Diffusional Study-100xPDEtest6 for i...
|
bboras
|
27409243
|
07/31/15 |
Correct PDE conc....
|
Fully-Implicit Finite Volum...
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 360000 elements
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 75
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 300
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation6
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation7
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation12
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"ode"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras-Diffusional Study-1xPDEtest5
|
bboras
|
27409243
|
07/31/15 |
Correct PDE conc....
|
Fully-Implicit Finite Volum...
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 75
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 300
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Copy of Copy of Copy of Simulation0 137826 elements diffusion 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation6
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation7
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation11
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Simulation13
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Copy of Simulation12
|
Semi-Implicit Finite Volume-Particle Hybrid, Regular Grid (Fixed Time Step)
|
"Copy of Correct PDE conc. with new geo with crop correct size"
- Copy of Simulation12 1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"ode"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 360000 elements
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Correct PDE conc. with new geo with crop correct size"
- Simulation0 137826 elements diffusion 9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
hillelab: JungSR_PAR2_desensitization2015
|
jsr007
|
26927499
|
06/13/16 |
modelinOct2010...
|
Combined Stiff Solver (IDA/...
|
"modelinOct2010"
- Figure 7
|
Combined Stiff Solver (IDA/CVODE)
|
|
Schott_et_al_2016 AMF Symbiosis with SWEET
|
idreyer
|
27446142
|
08/29/17 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
RS_JBC2016
|
rsong
|
27605670
|
09/29/16 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- DA1.0
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- DA0.1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- DA0.1 + MMPX
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- DA0.1 + BAY607550
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- DA0.1 + SNAP
|
Combined Stiff Solver (IDA/CVODE)
|
|
hillelab: KruseVivasTraynorKaplanHille_PI-...
|
mkruse
|
26818524
|
02/18/16 |
simulations...
|
Combined Stiff Solver (IDA/...
|
"simulations"
- Oxo-M
|
Combined Stiff Solver (IDA/CVODE)
|
"simulations"
- Oxo-M with TubbyR332
|
Combined Stiff Solver (IDA/CVODE)
|
"simulations"
- VSP
|
Combined Stiff Solver (IDA/CVODE)
|
"simulations"
- Oxo-M with fura-2
|
Combined Stiff Solver (IDA/CVODE)
|
"simulations"
- Oxo-M with PH-PLCd1
|
Combined Stiff Solver (IDA/CVODE)
|
"simulations"
- Oxo-M with LIBRAVIII
|
Combined Stiff Solver (IDA/CVODE)
|
"simulations"
- Oxo-M with C1-domain
|
Combined Stiff Solver (IDA/CVODE)
|
|
fX_platelet_binding
|
agolomy
|
26874201
|
01/20/16 |
Application0...
|
Fully-Implicit Finite Volum...
|
"Application0"
- Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
fX_thrombus_binding
|
agolomy
|
26874201
|
01/20/16 |
Application1...
|
Fully-Implicit Finite Volum...
|
"Application1"
- Simulation1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
BEN
|
sayak66
|
27271916
|
01/12/15 |
Needle...
|
Fully-Implicit Finite Volum...
|
"Needle"
- Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Smoldyn
|
sayak66
|
27271916
|
11/26/14 |
Det...
|
Fully-Implicit Finite Volum...
|
"Det"
- Simulation1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"stoch"
- Simulation0
|
Smoldyn (Spatial Stochastic Simulator)
|
|
Pin1_2Domains(diffKds)_monovalentligand
|
mjr323
|
28652372
|
08/29/17 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- Pin1-FLw/p131_first titration point
|
Combined Stiff Solver (IDA/CVODE)
|
|
Pin1_2domain(diffKds)_w_Bivalentligand(dif...
|
mjr323
|
28652372
|
08/29/17 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- Pin1_p131/p144_titrationsample1_no bivalent species
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Pin1_p131/p144_titrationsample1
|
Combined Stiff Solver (IDA/CVODE)
|
|
Pin1_2domain(diffKds)_w_Bivalentligand(dif...
|
mjr323
|
28652372
|
08/24/17 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- Pin1=196uM,IKpS163173=44uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Pin1=212uM,IKpS163173=2640uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2BR_prot_Pin1=196uM,IKpS163173=44uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2BR_prot_Pin1=201uM,IKpS163173=55uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2BR_prot_Pin1=206uM,IKpS163173=82uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2BR_prot_Pin1=224uM,IKpS163173=165uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2BR_prot_Pin1=237uM,IKpS163173=330uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2BR_prot_Pin1=250uM,IKpS163173=660uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2BR_prot_Pin1=244uM,IKpS163173=1320uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2BR_prot_Pin1=212uM,IKpS163173=2640uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- from2brprot Pin1=196uM,IKpS131144=44uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_Pin1=250uM,IKpS163173=37uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_Pin1=250uM,IKpS163173=73uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_Pin1=250uM,IKpS163173=147uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_Pin1=250uM,IKpS163173=293uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_Pin1=250uM,IKpS163173=587uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_Pin1=250uM,IKpS163173=1174uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_Pin1=250uM,IKpS163173=2347uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_nitrogen_Pin1=250uM,IKpS163173=37uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_nitrogen_Pin1=250uM,IKpS163173=73uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_nitrogen_Pin1=250uM,IKpS163173=147uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_nitrogen_Pin1=250uM,IKpS163173=293uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_nitrogen_Pin1=250uM,IKpS163173=587uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_nitrogen_Pin1=250uM,IKpS163173=1174uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 131144_2br_nitrogen_Pin1=250uM,IKpS163173=2347uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- testw1branch#_2BR_prot_Pin1=196uM,IKpS163173=44uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- testw1branch#_2BR_prot(lessbr2)_Pin1=196uM,IKpS163173=44uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- IRAK1B_2BR_prot_Pin1=13uM,IKpS163173=519uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- IRAK1B_2BR_prot_Pin1=27uM,IKpS163173=519uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- IRAK1B_2BR_prot_Pin1=53uM,IKpS163173=518uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- IRAK1B_2BR_prot_Pin1=106uM,IKpS163173=516uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- IRAK1B_2BR_prot_Pin1=213uM,IKpS163173=511uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- IRAK1B_2BR_prot_Pin1=425uM,IKpS163173=503uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- IRAK1B_2BR_prot_Pin1=850uM,IKpS163173=485uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=37uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=73uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=147uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=293uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=587uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=1174uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=2347uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=37uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=73uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=147uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=293uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=587uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=1174uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=2347uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel6373_refitOct_prot_Pin1=196uM,IKpS163173=44uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel6373_refitOct_prot_Pin1=201uM,IKpS163173=55uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel6373_refitOct_prot_Pin1=206uM,IKpS163173=82uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel6373_refitOct_prot_Pin1=224uM,IKpS163173=165uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel6373_refitOct_prot_Pin1=237uM,IKpS163173=330uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel6373_refitOct_prot_Pin1=250uM,IKpS163173=660uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel6373_refitOct_prot_Pin1=244uM,IKpS163173=1320uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel6373_refitOct_prot_Pin1=212uM,IKpS163173=2640uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitNov_Ni_Pin1=196uM,IKpS163173=44uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitOct_Ni_Pin1=201uM,IKpS163173=55uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitOct_Ni_Pin1=206uM,IKpS163173=82uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitOct_Ni_Pin1=224uM,IKpS163173=165uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitOct_Ni_Pin1=237uM,IKpS163173=330uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitOct_Ni_Pin1=250uM,IKpS163173=660uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitOct_Ni_Pin1=244uM,IKpS163173=1320uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitOct_Ni_Pin1=212uM,IKpS163173=2640uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitNov_Ni_Pin1=201uM,IKpS163173=55uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitNov_Ni_Pin1=206uM,IKpS163173=82uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitNov_Ni_Pin1=224uM,IKpS163173=165uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitNov_Ni_Pin1=237uM,IKpS163173=330uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitNov_Ni_Pin1=250uM,IKpS163173=660uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitNov_Ni_Pin1=244uM,IKpS163173=1320uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_refitNov_Ni_Pin1=212uM,IKpS163173=2640uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=37uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=147uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=293uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=587uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=1170uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=2347uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_testpopgrab_Ni_Pin1=201uM,IKpS163173=55uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_testpopcalc_Ni_Pin1=201uM,IKpS163173=55uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_testscalekeq_Ni_Pin1=201uM,IKpS163173=55uM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- 2brmodel_testnewscalekeq_Ni_Pin1=201uM,IKpS163173=55uM
|
Combined Stiff Solver (IDA/CVODE)
|
|
Spine Model Final Rangamani et al PNAS 201...
|
prangamani
|
27551076
|
08/24/16 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- basic simulation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Arp23 variation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Nuc-Sev phase
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- cofilin variation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- CaM variation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Ng variation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- PP1 variation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- CaN variation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Rho GTP level
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- sensitivity kage
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- sensitivity with cofilin
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- sensitivity with Arp2/3
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- CaN sensitivity
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- CaMKII-f-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- CaMKII-G-actin sensitivity
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- cdc42GTP sensitivity
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Cdc42 GEF sensitivity
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- I1 sensitivity
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- LIMK sensitivity
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- MLC sensitivity
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Myoppase active sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Myoppase sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Ng sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- phi sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- PP1 sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Rho GAP sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Rho GEF sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Rho GDP sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- ROCK sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- SSH1 sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- VO sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- w sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- WASP sens
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- k-arp23 inactivation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- k-calcineurin-activation-by-cam
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcap
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kdeg
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- knuc
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- ksev
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kshrink
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- KAPPA
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat2
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat 3
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Kcat CaMKII activation by CAM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat camkii inactivation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat cd42 acticaion
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat cdc42 gef activation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat cdc42 gef inactivation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat cdc42 hydrolysis
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat cofilin activation through ssh1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat cofilin inactivation through LIMK
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat i1 inactivation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat limk rock
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat mlc rock
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat myoppase dephos
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat myoppase rock1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat myoppase rock
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat pp1 by camkii
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat rhogap camkii
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat rho gef camkii
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kcat Rho gtp by Rho gef
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kf
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kf arp23 activation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kf CaM NG
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- camkii f-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- camkii g-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kf cdc42 wasp
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kf MLC phosphorylation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kf myoppase basal
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kf rock act by rho
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kf rock inact
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Km
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km1 camkii activation by cam
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km1 PP1 activation by i1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km2
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km can cam
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- CaN inactivation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- CaMKii activation by CaM
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Km CaMKII inactivation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km cdc42 activation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km cdc42 gef activation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km cdc42 gef
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km cdc42 hydrolysis
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km cofilin actiation ssh1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km i1 activation by CaN
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- Km i1 inactivation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km limk activation by rock
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km limk inactivation by rock
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km mlc dephosphorylation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km myoppase activation dephos
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km myoppase inactivation rock
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km pp1 inct by camkii
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km rho gef inactivation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km rhogap camkii
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km rho gap pp1
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km rhogef camkii
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km rhogtp by rhogef
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km rhogtp hhydrolysis
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km ssh1 dephos
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- km ssh1 phos camkii
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr arp activation
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr CaM binding NG
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr caMkii binding f-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr camkii g-actin
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr cdc42 wasp
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr MLCp basal
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr myosin ppase basal
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr rock by rho
|
Combined Stiff Solver (IDA/CVODE)
|
"Application0"
- kr rock inacivation
|
Combined Stiff Solver (IDA/CVODE)
|
|
KeumKruseKimHilleSuh_2016
|
hillelab
|
27222577
|
01/28/16 |
modelinOct2010...
|
Combined Stiff Solver (IDA/...
|
"modelinOct2010"
- DFH Figure 5A "UTP"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 5B "UTP"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 6B "Oxo"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 6B pipette dialysis
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 6E
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 7B
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- VSP
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 8C
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 8D "4K at resting rate"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figure 8D "4K turned off"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 1E
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 1F
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figures 4G and 4H
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 6B
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figures 6C and 6D
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8A except Fura, Libra, C1
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8A Fura
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8A Libra, C1
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8B except Fura, Libra, C1
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- FDH Figure 8C except Fura, Libra, C1
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figures 4C and 5A "Oxo"
|
Combined Stiff Solver (IDA/CVODE)
|
"modelinOct2010"
- DFH Figures 4D and 5B "Oxo" and 6F
|
Combined Stiff Solver (IDA/CVODE)
|
|
minepsp
|
gregl
|
27783155
|
06/01/16 |
compartment...
|
Combined Stiff Solver (IDA/...
|
"compartment"
- Simulation1
|
Combined Stiff Solver (IDA/CVODE)
|
|
Axon_FDAP
|
marynka
|
27831495
|
11/29/16 |
wt uniform...
|
Fully-Implicit Finite Volum...
|
"wt uniform"
- F/G=10/190, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=40-50, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=20-30 , Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=60-70, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=80-90, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=100-110, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=120-130, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=140-150, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=160-170, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=180-190, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt uniform"
- Factin=40-190, Kd=0.005,0.0075
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
GF-actin FDAP
|
marynka
|
27831495
|
08/18/16 |
wt D=3...
|
Fully-Implicit Finite Volum...
|
"wt D=3"
- F/G=10/190, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=20-30 , Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=40-50, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=60-70, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=80-90, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=100-110, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=120-130, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=140-150, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=160-170, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=3"
- Factin=180-190, Kd=0.01-0.2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation3
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation4
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation5
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation6
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation7
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation8
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"smaller+tall"
- Simulation9
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation20
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation21
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation22
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation23
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation24
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation25
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation26
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation27
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation28
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- Simulation29
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"wt D=5"
- F=100 D=10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Boras_PKA-Dual
|
bboras
|
25202018
|
06/18/15 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- C_kr=.23
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- C_kr=23
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- C_kd=.0038
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- C_kd=.000038
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kf_A=.8
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kf_A=.008
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kr_A=.12
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kr_A=.0012
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kf_B=.82
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kf_B=.0082
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kr_B=.00221
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kr_B=.0000221
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Kr_B=.0000221
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- F_B_binding=31.75
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- F_B_binding=.3175
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- B_factor=50
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- B_factor=.5
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- B_kd=.13
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- B_kd=.0013
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- A_kd=.3
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- A_kd=.003
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- F_A_binding=3
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- F_A_binding=.03
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- A_Factor=230
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- A_Factor=2.3
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA_CBD-A_mutant_B-inhibited
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- free R more points
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Holo more points
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA_CBD-B_mutant_A-inhibited
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA_Dual_mutant_B-inhibited
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- More points free R
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- More points Holo
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA_Dual_mutant_A-inhibited
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- R-C
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Free R
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA_CBD-A_mutant_A-inhibited
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- More points free R
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- More points Holo
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA_Dimer_mutant_B-inhibited
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Holo more points
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- free R more points
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA-Dimer_mutant_A-inhibited
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- More points Holo
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- More points free R
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA-Unconstrained
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA-CBD-B
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA-CBD-A
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA-Dimer
|
bboras
|
25202018
|
09/17/14 |
test...
|
Combined Stiff Solver (IDA/...
|
"test"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- C_kr=.23
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- C_kr=23
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- C_kd=.0038
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- C_kd=.000038
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kf_A=.8
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kf_A=.008
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kr_A=.12
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kr_A=.0012
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kf_B=.82
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kf_B=.0082
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kr_B=.00221
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Kr_B=.0000221
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- Copy of Kr_B=.0000221
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- F_B_binding=31.75
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- F_B_binding=.3175
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- B_factor=50
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- B_factor=.5
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- B_kd=.13
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- B_kd=.0013
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- A_kd=.3
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- A_kd=.003
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- F_A_binding=3
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- F_A_binding=.03
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- A_Factor=230
|
Combined Stiff Solver (IDA/CVODE)
|
"test"
- A_Factor=2.3
|
Combined Stiff Solver (IDA/CVODE)
|
|
Li2015_geometryCreatesNonlinearNuclearPKA
|
luli
|
25692798
|
12/23/14 |
cAMPinput_tertiar...
|
Fully-Implicit Finite Volum...
|
"cAMPinput_tertiary3"
- cAMPtertiaryEnd
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"cAMPinput_secondary3"
- cAMPsecondaryEnd
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"cAMPinput_primary3"
- cAMPprimaryEnd
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"cAMPinput_primary1"
- cAMPprimaryBegin
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"cAMPinput_primary2"
- primaryMiddle
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"cAMPinput_secondary1"
- cAMPsecondaryMiddle1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"cAMPinput_secondary2"
- cAMPsecondaryMiddle2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"cAMPinput_tertiary1"
- cAMPtertiaryMiddle1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"cAMPinput_tertiary2"
- cAMPtertiaryMiddle2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
AKAP7_PLB_Binding_2PKA
|
Marc.Rigatti
|
26027516
|
06/10/15 |
PLB 0.2uM...
|
Combined Stiff Solver (IDA/...
|
"PLB 0.2uM"
- Simulation7
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 5.0uM"
- Simulation13
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 5.0uM"
- PDE_0.2
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 5.0uM"
- PDE_0.3
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 5.0uM"
- PDE_0.4
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 5.0uM"
- AC_0.15_PDE_0.3
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 5.0uM"
- Copy of PDE_0.4
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 5.0uM"
- Copy of AC_0.15_PDE_0.3
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- Simulation2
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- AC_0.2
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- Copy of Copy of Simulation2
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- AC_0.15
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- Copy of AC_0.15
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- AC_0.15 PDE_0.2
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- Baseline AC PDE_0.2
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- Copy of AC_0.15 PDE_0.2
|
Combined Stiff Solver (IDA/CVODE)
|
"cAMP_PDE_Gs_param"
- Copy of Copy of AC_0.15 PDE_0.2
|
Combined Stiff Solver (IDA/CVODE)
|
"Copy of PLB 0.2uM"
- Simulation3
|
Combined Stiff Solver (IDA/CVODE)
|
"Copy of PLB 2.0uM"
- Simulation4
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Baseline cAMP low
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Baseline cAMP ~1uM
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 2.0uM"
- Simulation1
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Baseline cAMP ~0.62uM
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Baseline cAMP ~0.62uM increased PP
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Baseline cAMP ~0.62uM Km PP 10 vs 2.7
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Baseline cAMP ~0.62uM Km PP 5
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Copy of Baseline cAMP low PLB 50
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Copy of Baseline cAMP low
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Copy of Copy of Baseline cAMP low PLB 50
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Copy of Copy of Copy of Baseline cAMP low PLB 50
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Copy of Copy of Copy of Copy of Baseline cAMP low PLB 50
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Copy of Copy of Copy of Copy of Baseline cAMP low PLB 50 1
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Copy of Baseline cAMP ~0.62uM
|
Combined Stiff Solver (IDA/CVODE)
|
"PLB 38uM"
- Baseline cAMP ~0.62uM Increased PP
|
Combined Stiff Solver (IDA/CVODE)
|
|
fXii_activation
|
agolomy
|
25688860
|
08/31/13 |
Application0...
|
Fully-Implicit Finite Volum...
|
"Application0"
- Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
CPX Binding
|
jdittman
|
25809246
|
10/28/14 |
Bouton R200...
|
Fully-Implicit Finite Volum...
|
"Bouton R200"
- Long Sim
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"R200 Steady"
- Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Buffer in cylinder"
- Simulation1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Bouton R200"
- Short Sim
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
FDAP diffusion
|
marynka
|
25865895
|
08/16/16 |
Application half-...
|
Fully-Implicit Finite Volum...
|
"Application half-cell"
- short D= from 2 to 10 Gactin=1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Application half-cell"
- Copy of D=2 - 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" half-cell-smaller+tall"
- Simulation0
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" half-cell-smaller+tall"
- Simulation1
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" half-cell-smaller+tall"
- Simulation2
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
" half-cell-smaller+tall"
- Simulation3
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Application half-cell"
- short D between 2 and 10 Gactin=100
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
"Application half-cell"
- D=2 - 10
|
Fully-Implicit Finite Volume, Regular Grid (Variable Time Step)
|
|
Greenwald MIMB 2012 - Fit 1
|
ecg5pc
|
24052393
|
09/12/12 |
Application0...
|
Combined Stiff Solver (IDA/...
|
"Application0"
- Simulation0
|
Combined Stiff Solver (IDA/CVODE)
|
|
Greenwald MIMB 2012 - Perturb
|
ecg5pc
|
24052393
|
04/27/12 |
|
Combined Stiff Solver (IDA/...
|
""
- Baseline
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Saturation - 25 uM FSK
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Saturation - 100 uM FSK
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Buffering - 1.5 uM ICUE
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Buffering - 3 uM ICUE
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Kinetics - 10%
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Kinetics - 1%
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Kinetics - 0.1%
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Original Simulation
|
Combined Stiff Solver (IDA/CVODE)
|
|
Greenwald MIMB 2012 - Fit 1
|
ecg5pc
|
24052393
|
04/27/12 |
|
Combined Stiff Solver (IDA/...
|
""
- Fit2_results
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Fit_PreTest
|
Combined Stiff Solver (IDA/CVODE)
|
|
Greenwald MIMB 2012 - Fit 2
|
ecg5pc
|
24052393
|
04/27/12 |
|
Combined Stiff Solver (IDA/...
|
""
- Fit_PreTest
|
Combined Stiff Solver (IDA/CVODE)
|
|
Greenwald MIMB 2012 - Base Model
|
ecg5pc
|
24052393
|
04/27/12 |
|
Combined Stiff Solver (IDA/...
|
""
- Fit_PreTest
|
Combined Stiff Solver (IDA/CVODE)
|
""
- Fit1_results
|
Combined Stiff Solver (IDA/CVODE)
|
|
Podocyte Nested FFM model (copy sensitivit...
|
sihar
|
24497609
|
07/03/13 |
Compart...
|
CVODE (Variable Order, Vari...
|
"Compart"
- 31) PTP dephospho by PP1 kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 32) MEK* dephospho by PP2A Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 32) MEK* dephospho by PP2A kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 33) MEK_ser dephospho by PP2A Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 33) MEK_ser dephospho by PP2A kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 34) MAPK* dephospho by MKP1 Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 34) MAPK* dephospho by MKP1 kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 35) MAPK_tyr dephospho by MKP1 Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 35) MAPK_tyr dephospho by MKP1 kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 36) MAPK* dephospho by MKP1* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 36) MAPK* dephospho by MKP1* kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 37) MAPK_tyr dephospho by MKP1* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 37) MAPK_tyr dephospho by MKP1* kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 38) MAPK* dephospho by MKP2 Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 38) MAPK* dephospho by MKP2 kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 39) MAPK_tyr dephospho by MKP2 Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 39) MAPK_tyr dephospho by MKP2 kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 40) MAPK* dephospho by PTP Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 40) MAPK* dephospho by PTP kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 41) MKP1 phospho by MAPK* cyto Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 41) MKP1 phospho by MAPK* cyto kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 42) MKP1* dephospho cyto kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 43) MKP1 degradation kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 44) MKP1* degradation kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 45) PDE phospho by PKA Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 45) PDE phospho by PKA kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 46) PDE* dephospho Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 46) PDE* dephospho kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 47) R2C2 1 kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 47) R2C2 1 kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 48) R2C2 2 kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 48) R2C2 2 kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 49) R2C2 3 kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 49) R2C2 3 kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 50) R2C2 4 kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 50) R2C2 4 kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 51) PKA release 1 kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 51) PKA release 1 kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 52) PKA release 2 kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 52) PKA release 2 kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 53) PKA release by PKI kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 54) EPAC activated by cAMP kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 54) EPAC activated by cAMP kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 55) MEK phospho by RapRaf Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 55) MEK phospho by RapRaf kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 56) MEK_ser phospho by RapRaf Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 56) MEK_ser phospho by RapRaf kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 57) Braf activation by Rap kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 57) Braf activation by Rap kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 58) RapGDP - RapGTP kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 58) RapGDP - RapGTP kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 59) Rap1 activation by EPAC step 1
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 59) Rap1 activation by EPAC step 2
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 60) Rap1 activation by EPAC step 3
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 61) Rap1 deactivation step 1
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 61) Rap1 deactivation step 2
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 62) Rap1 deactivation step 3
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 63) cAMP production Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 63) cAMP production kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 64) BAR phosphorylation Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 64) BAR phosphorylation kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 65) BAR activation by ISO kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 65) BAR activation by ISO kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 66) Gtrimer binds to BAR kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 66) Gtrimer binds to BAR kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 67) Gprotein activation kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 67) Gprotein activation kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 68) GRK recruitment by Gbg kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 68) GRK recruitment by Gbg kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 69) GRK on membrane kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 69) GRK on membrane kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 70) GRK to cytosol kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 71) AC activation kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 71) AC activation kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 72) Gs deactivation kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 73) G trimerization kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 74) BAR recycling kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MAPK* import
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MAPK* export
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MAPK import
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MAPK export
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PKA import
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PKA export
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PKI.PKA export
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PKI import
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MKP1 mRNA export
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MKP1 import
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MKP1 export
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 15) MKP1 phospho by MAPK kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 16) MKP1* dephospho kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 15) MKP1 phospho by MAPK Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 17) MKP1 turnover kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 18) MKP1* turnover kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 19) PKI + PKA kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 19) PKI + PKA kr
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 20) MKP1 translation kf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 21) MEK phospho by Braf* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 21) MEK phospho by Braf* kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 22) MEK_ser phospho by Braf* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 22) MEK_ser phospho by Braf* kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 23) MAPK phospho by MEK* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 23) MAPK phospho by MEK* kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 24) MAPK_tyr phospho by MEK* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 24) MAPK_tyr phospho by MEK* kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 25) cAMP degradation by PDE Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 25) cAMP degradation by PDE kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 26) cAMP degradation by PDE* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 26) cAMP degradation by PDE* kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 27) cAMP degradation by PDE_high Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 27) cAMP degradation by PDE_high kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 28) Braf phospho by PKA Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 28) Braf phospho by PKA kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 29) Braf dephospho by PP2A Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 29) Braf dephospho by PP2A kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 30) PTP phospho by PKA Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 30) PTP phospho by PKA kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 31) PTP dephospho by PP1 Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Iso
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- BAR
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Gs trimer
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- AC
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MAPK
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MKP1* import
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MKP1* export
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- R2C2
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- ATP
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MKP1
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- bRaf
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Rap1GAP
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MEK
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- EPAC
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PTP
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PP2A
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- GRK
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PDE
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MKP2
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Rap1GDP
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MSK
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PP1A
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- MKP1 DNA
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- PP2A nucleus
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- CREB
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 1) MAPK phospho MSK Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 1) MAPK phospho MSK kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 2) MSK dephospho
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 3) PKA phospho CREB Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 3) PKA phospho CREB kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 4) MSK phospho CREB Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 4) MSK phospho CREB kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 5) PP2A dephosho CREB Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 5) PP2A dephosho CREB kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 6) PP1A dephospho CREB Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 6) PP1A dephospho CREB kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 7) MKP1 gene activation Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 7) MKP1 gene activation kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 8) MKP1 basal transcription
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 9) MAPK_act dephospho by MKP2 Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 9) MAPK_act dephospho by MKP2 kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 10) MAPK_act dephospho by MKP1 Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 10) MAPK_act dephospho by MKP1 kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 11) MAPK_act dephospho by MKP1* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 11) MAPK_act dephospho by MKP1* kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 12) MAPK_tyr dephospho by MKP2 Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 12) MAPK_tyr dephospho by MKP2 kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 13) MAPK_tyr dephospho by MKP Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 13) MAPK_tyr dephospho by MKP kcat
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 14) MAPK_tyr dephospho by MKP1* Km
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- 14) MAPK_tyr dephospho by MKP1* kcat
|
CVODE (Variable Order, Variable Time Step)
|
|
Podocyte Nested FFM model
|
sihar
|
24497609
|
05/14/13 |
Compart...
|
CVODE (Variable Order, Vari...
|
"Compart"
- U0126
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- baseline
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Rolipram + U0216
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Rolipram2
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Copy of iso
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Copy of Copy of iso
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Copy of iso 1
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Copy of iso 2
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Copy of iso 3
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of EPAC
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of bRaf activation by PKA
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Iso 2
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of PKA
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of PKA deact PTP
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of MSK
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of PKI inhibition
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of PKA act CREB
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of bRaf->MEK
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal MEK->MAPK
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of PTP-|MAPK
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of PKA import
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- Removal of MAPK import
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- iso
|
CVODE (Variable Order, Variable Time Step)
|
"Compart"
- rpcamp
|
CVODE (Variable Order, Variable Time Step)
|
|
epsp_gcs
|
gregl
|
24671529
|
05/22/13 |
compartment...
|
Combined Stiff Solver (IDA/...
|
"compartment"
- Simulation1
|
Combined Stiff Solver (IDA/CVODE)
|
|
Boras_PKA-Dual
|
bboras
|
25202018
|
|