Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Reactions
Name
Structure
Kinetics
Depiction
Pin1A_Pin1BivAB r4 c0 MassAction
Pin1+LigPin1_A r0 c0 MassAction
Pin1+LigPin1B_ r1 c0 MassAction
Pin1_APin1BivBA r6 c0 MassAction
Pin1B_Pin1BivBA r7 c0 MassAction
Pin1_A+LigPin1AA r8 c0 MassAction
Lig+Pin1A_Pin1AA r9 c0 MassAction
Pin1B_+LigPin1BB r12 c0 MassAction
Pin1_B+LigPin1BB r13 c0 MassAction
Pin1_A+LigPin1BA r16 c0 MassAction
Pin1B_+LigPin1BA r17 c0 MassAction
Pin1_BPin1BivAB r5 c0 MassAction
Pin1_B+LigPin1AB r20 c0 MassAction
Pin1A_+LigPin1AB r21 c0 MassAction
Pin1+LigPin1A_ r2 c0 MassAction
Pin1+LigPin1_B r3 c0 MassAction
Pin1+Pin1B_Pin1B_Pin1A_ r10 c0 MassAction
Pin1+Pin1_BPin1_BPin1_A r15 c0 MassAction
Pin1+Pin1A_Pin1A_Pin1_B r18 c0 MassAction
Pin1+Pin1_APin1_APin1B_ r22 c0 MassAction
Pin1_B+Pin1Pin1A_Pin1_B r24 c0 MassAction
Pin1_A+Pin1Pin1_BPin1_A r14 c0 MassAction
Pin1B_+Pin1Pin1_APin1B_ r23 c0 MassAction
Pin1A_+Pin1Pin1B_Pin1A_ r11 c0 MassAction

r4 Universal ID's

r4 Text Annotations

r0 Universal ID's

r0 Text Annotations

r1 Universal ID's

r1 Text Annotations

r6 Universal ID's

r6 Text Annotations

r7 Universal ID's

r7 Text Annotations

r8 Universal ID's

r8 Text Annotations

r9 Universal ID's

r9 Text Annotations

r12 Universal ID's

r12 Text Annotations

r13 Universal ID's

r13 Text Annotations

r16 Universal ID's

r16 Text Annotations

r17 Universal ID's

r17 Text Annotations

r5 Universal ID's

r5 Text Annotations

r20 Universal ID's

r20 Text Annotations

r21 Universal ID's

r21 Text Annotations

r2 Universal ID's

r2 Text Annotations

r3 Universal ID's

r3 Text Annotations

r10 Universal ID's

r10 Text Annotations

r15 Universal ID's

r15 Text Annotations

r18 Universal ID's

r18 Text Annotations

r22 Universal ID's

r22 Text Annotations

r24 Universal ID's

r24 Text Annotations

r14 Universal ID's

r14 Text Annotations

r23 Universal ID's

r23 Text Annotations

r11 Universal ID's

r11 Text Annotations

Expressions for r4

reaction rate

J

((Kf * Pin1A_) - (Kr * Pin1BivAB)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1]

reverse rate constant

Kr

18.5 [s-1]

Expressions for r0

reaction rate

J

(((Kf * Pin1) * Lig) - (Kr * Pin1_A)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

68100.0 [s-1]

Expressions for r1

reaction rate

J

(((Kf * Pin1) * Lig) - (Kr * Pin1B_)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

23100.0 [s-1]

Expressions for r6

reaction rate

J

((Kf * Pin1_A) - (Kr * Pin1BivBA)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1]

reverse rate constant

Kr

23.1 [s-1]

Expressions for r7

reaction rate

J

((Kf * Pin1B_) - (Kr * Pin1BivBA)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1]

reverse rate constant

Kr

68.1 [s-1]

Expressions for r8

reaction rate

J

(((Kf * Pin1_A) * Lig) - (Kr * Pin1AA)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

21500.0 [s-1]

Expressions for r9

reaction rate

J

(((Kf * Lig) * Pin1A_) - (Kr * Pin1AA)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

68100.0 [s-1]

Expressions for r12

reaction rate

J

(((Kf * Pin1B_) * Lig) - (Kr * Pin1BB)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

18500.0 [s-1]

Expressions for r13

reaction rate

J

(((Kf * Pin1_B) * Lig) - (Kr * Pin1BB)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

23100.0 [s-1]

Expressions for r16

reaction rate

J

(((Kf * Pin1_A) * Lig) - (Kr * Pin1BA)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

23100.0 [s-1]

Expressions for r17

reaction rate

J

(((Kf * Pin1B_) * Lig) - (Kr * Pin1BA)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

68100.0 [s-1]

Expressions for r5

reaction rate

J

((Kf * Pin1_B) - (Kr * Pin1BivAB)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1]

reverse rate constant

Kr

21.5 [s-1]

Expressions for r20

reaction rate

J

(((Kf * Pin1_B) * Lig) - (Kr * Pin1AB)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

21500.0 [s-1]

Expressions for r21

reaction rate

J

(((Kf * Pin1A_) * Lig) - (Kr * Pin1AB)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

18500.0 [s-1]

Expressions for r2

reaction rate

J

(((Kf * Pin1) * Lig) - (Kr * Pin1A_)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

21500.0 [s-1]

Expressions for r3

reaction rate

J

(((Kf * Pin1) * Lig) - (Kr * Pin1_B)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

18500.0 [s-1]

Expressions for r10

reaction rate

J

(((Kf * Pin1) * Pin1B_) - (Kr * Pin1B_Pin1A_)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

21500.0 [s-1]

Expressions for r15

reaction rate

J

(((Kf * Pin1) * Pin1_B) - (Kr * Pin1_BPin1_A)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

68100.0 [s-1]

Expressions for r18

reaction rate

J

(((Kf * Pin1) * Pin1A_) - (Kr * Pin1A_Pin1_B)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

18500.0 [s-1]

Expressions for r22

reaction rate

J

(((Kf * Pin1) * Pin1_A) - (Kr * Pin1_APin1B_)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

23100.0 [s-1]

Expressions for r24

reaction rate

J

(((Kf * Pin1_B) * Pin1) - (Kr * Pin1A_Pin1_B)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

21500.0 [s-1]

Expressions for r14

reaction rate

J

(((Kf * Pin1_A) * Pin1) - (Kr * Pin1_BPin1_A)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

18500.0 [s-1]

Expressions for r23

reaction rate

J

(((Kf * Pin1B_) * Pin1) - (Kr * Pin1_APin1B_)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

68100.0 [s-1]

Expressions for r11

reaction rate

J

(((Kf * Pin1A_) * Pin1) - (Kr * Pin1B_Pin1A_)) [uM.s-1]

forward rate constant

Kf

100.0 [s-1.uM-1]

reverse rate constant

Kr

23100.0 [s-1]

Structures

Name
Type
Electrical
c0 Compartment (+)   (-)

c0 Universal ID's

c0 Text Annotations

Species

Name
Structure
BioNetGen Definition
Depiction
Pin1AA c0 c0
Pin1BB c0 c0
Pin1AB c0 c0
Pin1BA c0 c0
Lig c0 c0
Pin1 c0 c0
Pin1_B c0 c0
Pin1BivAB c0 c0
Pin1A_ c0 c0
Pin1_A c0 c0
Pin1B_ c0 c0
Pin1BivBA c0 c0
Pin1B_Pin1A_ c0 c0
Pin1_APin1B_ c0 c0
Pin1A_Pin1_B c0 c0
Pin1_BPin1_A c0 c0

Pin1AA Universal ID's

Pin1AA Text Annotations

Pin1BB Universal ID's

Pin1BB Text Annotations

Pin1AB Universal ID's

Pin1AB Text Annotations

Pin1BA Universal ID's

Pin1BA Text Annotations

Lig Universal ID's

Lig Text Annotations

Pin1 Universal ID's

Pin1 Text Annotations

Pin1_B Universal ID's

Pin1_B Text Annotations

Pin1BivAB Universal ID's

Pin1BivAB Text Annotations

Pin1A_ Universal ID's

Pin1A_ Text Annotations

Pin1_A Universal ID's

Pin1_A Text Annotations

Pin1B_ Universal ID's

Pin1B_ Text Annotations

Pin1BivBA Universal ID's

Pin1BivBA Text Annotations

Pin1B_Pin1A_ Universal ID's

Pin1B_Pin1A_ Text Annotations

Pin1_APin1B_ Universal ID's

Pin1_APin1B_ Text Annotations

Pin1A_Pin1_B Universal ID's

Pin1A_Pin1_B Text Annotations

Pin1_BPin1_A Universal ID's

Pin1_BPin1_A Text Annotations

Molecules

Name
BioNetGen Definition
DEPICTION

Observables

Name
Structure
Count
BNGL Definition
Sequence Type
DEPICTION

Applications

Name
Properties Math Type
Annotation
Application0 Specs - Species
Specs - Reaction
Simulations 		Deterministic (ODE) Compartmental

Application0 Universal ID's

Application0 Text Annotations

Specifications (Species) - Application0 go to Simulations

Species
Initial Condition
Diffusion Constant
Structure
Pin1AA 0.0 [uM] 0.0 [um2/s] c0
Pin1BB 0.0 [uM] 0.0 [um2/s] c0
Pin1AB 0.0 [uM] 0.0 [um2/s] c0
Pin1BA 0.0 [uM] 0.0 [um2/s] c0
Lig 44.0 [uM] 0.0 [um2/s] c0
Pin1 196.0 [uM] 0.0 [um2/s] c0
Pin1_B 0.0 [uM] 0.0 [um2/s] c0
Pin1BivAB 0.0 [uM] 0.0 [um2/s] c0
Pin1A_ 0.0 [uM] 0.0 [um2/s] c0
Pin1_A 0.0 [uM] 0.0 [um2/s] c0
Pin1B_ 0.0 [uM] 0.0 [um2/s] c0
Pin1BivBA 0.0 [uM] 0.0 [um2/s] c0
Pin1B_Pin1A_ 0.0 [uM] 0.0 [um2/s] c0
Pin1_APin1B_ 0.0 [uM] 0.0 [um2/s] c0
Pin1A_Pin1_B 0.0 [uM] 0.0 [um2/s] c0
Pin1_BPin1_A 0.0 [uM] 0.0 [um2/s] c0

Specifications (Reaction) - Application0 go to Simulations

Name
Enabled?
r4 included
r0 included
r1 included
r6 included
r7 included
r8 included
r9 included
r12 included
r13 included
r16 included
r17 included
r5 included
r20 included
r21 included
r2 included
r3 included
r10 included
r15 included
r18 included
r22 included
r24 included
r14 included
r23 included
r11 included

Simulations - Application0 go to Specifications

Name
End Time
Output Options
Pin1=196uM,IKpS163173=44uM 1.0

KeepEvery 1

KeepAtMost 1000
Pin1=212uM,IKpS163173=2640uM 1.0

KeepEvery 1

KeepAtMost 1000
from2BR_prot_Pin1=196uM,IKpS163173=44uM 1.0

KeepEvery 1

KeepAtMost 1000
from2BR_prot_Pin1=201uM,IKpS163173=55uM 1.0

KeepEvery 1

KeepAtMost 1000
from2BR_prot_Pin1=206uM,IKpS163173=82uM 1.0

KeepEvery 1

KeepAtMost 1000
from2BR_prot_Pin1=224uM,IKpS163173=165uM 1.0

KeepEvery 1

KeepAtMost 1000
from2BR_prot_Pin1=237uM,IKpS163173=330uM 1.0

KeepEvery 1

KeepAtMost 1000
from2BR_prot_Pin1=250uM,IKpS163173=660uM 1.0

KeepEvery 1

KeepAtMost 1000
from2BR_prot_Pin1=244uM,IKpS163173=1320uM 1.0

KeepEvery 1

KeepAtMost 1000
from2BR_prot_Pin1=212uM,IKpS163173=2640uM 1.0

KeepEvery 1

KeepAtMost 1000
from2brprot Pin1=196uM,IKpS131144=44uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_Pin1=250uM,IKpS163173=37uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_Pin1=250uM,IKpS163173=73uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_Pin1=250uM,IKpS163173=147uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_Pin1=250uM,IKpS163173=293uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_Pin1=250uM,IKpS163173=587uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_Pin1=250uM,IKpS163173=1174uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_Pin1=250uM,IKpS163173=2347uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_nitrogen_Pin1=250uM,IKpS163173=37uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_nitrogen_Pin1=250uM,IKpS163173=73uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_nitrogen_Pin1=250uM,IKpS163173=147uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_nitrogen_Pin1=250uM,IKpS163173=293uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_nitrogen_Pin1=250uM,IKpS163173=587uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_nitrogen_Pin1=250uM,IKpS163173=1174uM 1.0

KeepEvery 1

KeepAtMost 1000
131144_2br_nitrogen_Pin1=250uM,IKpS163173=2347uM 1.0

KeepEvery 1

KeepAtMost 1000
testw1branch#_2BR_prot_Pin1=196uM,IKpS163173=44uM 1.0

KeepEvery 1

KeepAtMost 1000
testw1branch#_2BR_prot(lessbr2)_Pin1=196uM,IKpS163173=44uM 1.0

KeepEvery 1

KeepAtMost 1000
IRAK1B_2BR_prot_Pin1=13uM,IKpS163173=519uM 1.0

KeepEvery 1

KeepAtMost 1000
IRAK1B_2BR_prot_Pin1=27uM,IKpS163173=519uM 1.0

KeepEvery 1

KeepAtMost 1000
IRAK1B_2BR_prot_Pin1=53uM,IKpS163173=518uM 1.0

KeepEvery 1

KeepAtMost 1000
IRAK1B_2BR_prot_Pin1=106uM,IKpS163173=516uM 1.0

KeepEvery 1

KeepAtMost 1000
IRAK1B_2BR_prot_Pin1=213uM,IKpS163173=511uM 1.0

KeepEvery 1

KeepAtMost 1000
IRAK1B_2BR_prot_Pin1=425uM,IKpS163173=503uM 1.0

KeepEvery 1

KeepAtMost 1000
IRAK1B_2BR_prot_Pin1=850uM,IKpS163173=485uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=37uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=73uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=147uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=293uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=587uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=1174uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_prot_Pin1=250uM,IKpS131144=2347uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=37uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=73uM 10.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=147uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=293uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=587uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=1174uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Octrefit_nit_Pin1=250uM,IKpS131144=2347uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel6373_refitOct_prot_Pin1=196uM,IKpS163173=44uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel6373_refitOct_prot_Pin1=201uM,IKpS163173=55uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel6373_refitOct_prot_Pin1=206uM,IKpS163173=82uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel6373_refitOct_prot_Pin1=224uM,IKpS163173=165uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel6373_refitOct_prot_Pin1=237uM,IKpS163173=330uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel6373_refitOct_prot_Pin1=250uM,IKpS163173=660uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel6373_refitOct_prot_Pin1=244uM,IKpS163173=1320uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel6373_refitOct_prot_Pin1=212uM,IKpS163173=2640uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitNov_Ni_Pin1=196uM,IKpS163173=44uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitOct_Ni_Pin1=201uM,IKpS163173=55uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitOct_Ni_Pin1=206uM,IKpS163173=82uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitOct_Ni_Pin1=224uM,IKpS163173=165uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitOct_Ni_Pin1=237uM,IKpS163173=330uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitOct_Ni_Pin1=250uM,IKpS163173=660uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitOct_Ni_Pin1=244uM,IKpS163173=1320uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitOct_Ni_Pin1=212uM,IKpS163173=2640uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitNov_Ni_Pin1=201uM,IKpS163173=55uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitNov_Ni_Pin1=206uM,IKpS163173=82uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitNov_Ni_Pin1=224uM,IKpS163173=165uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitNov_Ni_Pin1=237uM,IKpS163173=330uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitNov_Ni_Pin1=250uM,IKpS163173=660uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitNov_Ni_Pin1=244uM,IKpS163173=1320uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_refitNov_Ni_Pin1=212uM,IKpS163173=2640uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=37uM 10.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=147uM 10.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=293uM 10.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=587uM 10.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=1170uM 10.0

KeepEvery 1

KeepAtMost 1000
2brmodel_Novrefit_nit_Pin1=250uM,IKpS131144=2347uM 10.0

KeepEvery 1

KeepAtMost 1000
2brmodel_testpopgrab_Ni_Pin1=201uM,IKpS163173=55uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_testpopcalc_Ni_Pin1=201uM,IKpS163173=55uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_testscalekeq_Ni_Pin1=201uM,IKpS163173=55uM 1.0

KeepEvery 1

KeepAtMost 1000
2brmodel_testnewscalekeq_Ni_Pin1=201uM,IKpS163173=55uM 1.0

KeepEvery 1

KeepAtMost 1000

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Assignments

Name Variable Assignment Function Expression

Events

Name Trigger Type Variable Assignment

Geometry non-spatial120107596

(Origin: 0.0, 0.0, 0.0; Extent: 10.0, 10.0, 10.0 [um])

Dimension Type Subdomain Adjacent Subvolumes Size Mapped Compartment
Compartmental Compartment c0

Events

Name Variable Rate Expression

Global Parameters

Name
Expression

Downloads

Model Format
Model Downloads
Virtual Cell Markup Language VCML File
PDF Report Report
COMBINE Archive OMEX File
SEDML SEDML File
File Format
Application Downloads
BNGL Application0.bngl
SBML Application0.sbml
Matlab Application0.m
NFSim XML Application0.xml