Reaction Diagram
Physiology
Universal ID's | Text Annotations |
---|---|
|
|
Reaction |
Name
Structure
|
Kinetics | Depiction |
---|---|---|---|
BRaf_star_cellBRaf_cell |
PP_deact_BRaf
cell
|
HMMIrreversible | BRaf_star_cellBRaf_cell |
|
|
reaction rate (J): ((Vmax * BRaf_star_cell) / (Km + BRaf_star_cell))[uM.s-1]
Km (1/2 max) (Km): 15.66[uM] max reaction rate (Vmax): (kcat * PP2A_cell)[uM.s-1] user defined (kcat): 6.0[s-1] |
|
BRaf_cellBRaf_star_cell |
PKA_act_BRaf
cell
|
GeneralKinetics | BRaf_cellBRaf_star_cell |
|
|
reaction rate (J): (Vmax * BRaf_cell / (Km + BRaf_cell))[uM.s-1]
user defined (Km): 1.0[uM] user defined (Vmax): (kcat * PKA_cell)[uM.s-1] user defined (kcat): 0.1[s-1] |
|
GRK_PMGRK_cell |
GRK to cytosol
PM
|
MassAction | GRK_PMGRK_cell |
|
|
reaction rate (J): ((Kf * GRK_PM) - (Kr * GRK_cell))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf): 0.01[s-1] reverse rate constant (Kr): 0.0[molecules.um-2.s-1.uM-1] |
|
Rap1_Epac_GMEpac_cAMP_cell+Rap1_GTP_GM |
08: Epac exchange
GM
|
GeneralKinetics | Rap1_Epac_GMEpac_cAMP_cell+Rap1_GTP_GM |
|
|
reaction rate (J_08__Epac_exchange): (Rap1_Epac_GM * kEpacEXCH)[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] user defined (kEpacEXCH): 0.2[s-1] |
|
cAMP4_R2C2_cellcAMP4_R2C_cell+PKA_cell |
Release of C1
cell
|
MassAction | cAMP4_R2C2_cellcAMP4_R2C_cell+PKA_cell |
|
|
reaction rate (J): ((Kf * cAMP4_R2C2_cell) - ((Kr * cAMP4_R2C_cell) * PKA_cell))[uM.s-1]
forward rate constant (Kf): 0.6[s-1] reverse rate constant (Kr): 0.18[s-1.uM-1] |
|
MAPKK_cellMAPKK_Ser_cell |
Rap1raf_act_MAPKK
GM
|
GeneralKinetics | MAPKK_cellMAPKK_Ser_cell |
|
|
reaction rate (J): (Vmax * MAPKK_cell / (Km + MAPKK_cell))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] user defined (Km): 0.4[uM] user defined (Vmax): (kcat * Rap1_BRaf_GM)[molecules.um-2.s-1] user defined (kcat): 0.95[s-1] |
|
MKP1_cellMKP1p_cell |
MKP1 phospho by MAPKactive
cell
|
HMMIrreversible | MKP1_cellMKP1p_cell |
|
|
reaction rate (J): ((Vmax * MKP1_cell) / (Km + MKP1_cell))[uM.s-1]
Km (1/2 max) (Km): 25.641[uM] max reaction rate (Vmax): (kcat * MAPK_active_cell)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
MKP1p_nucleus |
MKP1p turnover nucleus
nucleus
|
MassAction | MKP1p_nucleus |
|
|
reaction rate (J): (Kf * MKP1p_nucleus)[uM.s-1]
forward rate constant (Kf): 1.0E-4[s-1] reverse rate constant (Kr): 0.0[uM.s-1] |
|
cAMP_cellAMP_cell |
07: PDE
cell
|
HMMIrreversible | cAMP_cellAMP_cell |
|
|
reaction rate (J): ((Vmax_07__PDE * cAMP_cell) / (Km_07__PDE + cAMP_cell))[uM.s-1]
Km (1/2 max) (Km_07__PDE): 1.3[uM] max reaction rate (Vmax_07__PDE): (kCATpde * PDE_cell)[uM.s-1] user defined (kCATpde): 8.0[s-1] |
|
MAPK_active_nucleusMAPK_thr_nucleus |
MKP1p deact MAPKact
nucleus
|
HMMIrreversible | MAPK_active_nucleusMAPK_thr_nucleus |
|
|
reaction rate (J): ((Vmax * MAPK_active_nucleus) / (Km + MAPK_active_nucleus))[uM.s-1]
Km (1/2 max) (Km): 0.0667[uM] max reaction rate (Vmax): (kcat * MKP1p_nucleus)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
MKP1_nucleus |
MKP1 turnover in nucleus
nucleus
|
MassAction | MKP1_nucleus |
|
|
reaction rate (J): (Kf * MKP1_nucleus)[uM.s-1]
forward rate constant (Kf): 3.7E-4[s-1] reverse rate constant (Kr): 0.0[uM.s-1] |
|
isoprenaline_ec+beta_PMbeta_isop_PM |
01b: isoprenaline binding
PM
|
MassAction | isoprenaline_ec+beta_PMbeta_isop_PM |
|
|
reaction rate (J): (((Kf_01b__isoprenaline_binding * isoprenaline_ec) * beta_PM) - (Kr_01b__isoprenaline_binding * beta_isop_PM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf_01b__isoprenaline_binding): 0.1[s-1.uM-1] reverse rate constant (Kr_01b__isoprenaline_binding): 0.1[s-1] |
|
PTPSL_star_cellPTPSL_cell |
PTPSL_dephos
cell
|
HMMIrreversible | PTPSL_star_cellPTPSL_cell |
|
|
reaction rate (J): ((Vmax * PTPSL_star_cell) / (Km + PTPSL_star_cell))[uM.s-1]
Km (1/2 max) (Km): 6.0[uM] max reaction rate (Vmax): (kcat * PP1_cell)[uM.s-1] user defined (kcat): 5.0[s-1] |
|
MAPK_Thr_cellMAPK_active_cell |
MAPKK_act_MAPK_thr
cell
|
HMMIrreversible | MAPK_Thr_cellMAPK_active_cell |
|
|
reaction rate (J): ((Vmax * MAPK_Thr_cell) / (Km + MAPK_Thr_cell))[uM.s-1]
Km (1/2 max) (Km): 0.046296[uM] max reaction rate (Vmax): (0.15 * MAPKK_active_cell)[uM.s-1] |
|
beta_P_PMbeta_PM |
Receptor recycling
PM
|
MassAction | beta_P_PMbeta_PM |
|
|
reaction rate (J): ((Kf * beta_P_PM) - (Kr * beta_PM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf): 4.7E-4[s-1] reverse rate constant (Kr): 0.0[s-1] |
|
PDE_cellPDE_star_cell |
PKA_act_PDE
cell
|
HMMIrreversible | PDE_cellPDE_star_cell |
|
|
reaction rate (J): ((Vmax * PDE_cell) / (Km + PDE_cell))[uM.s-1]
Km (1/2 max) (Km): 0.5[uM] max reaction rate (Vmax): (kcat * PKA_cell)[uM.s-1] user defined (kcat): 9.0[s-1] |
|
MAPKK_active_cellMAPKK_Ser_cell |
PP2A_inact_MAPKK_active
cell
|
HMMIrreversible | MAPKK_active_cellMAPKK_Ser_cell |
|
|
reaction rate (J): ((Vmax * MAPKK_active_cell) / (Km + MAPKK_active_cell))[uM.s-1]
Km (1/2 max) (Km): 15.66[uM] max reaction rate (Vmax): (kcat * PP2A_cell)[uM.s-1] user defined (kcat): 6.0[s-1] |
|
inhibitedPKA_cellPKI_cell+PKA_cell |
PKA release by PKI
cell
|
MassAction | inhibitedPKA_cellPKI_cell+PKA_cell |
|
|
reaction rate (J): ((Kf * inhibitedPKA_cell) - ((Kr * PKI_cell) * PKA_cell))[uM.s-1]
forward rate constant (Kf): 1.0E-4[s-1] reverse rate constant (Kr): 0.0[s-1.uM-1] |
|
cAMP3_R2C2_cell+cAMP_cellcAMP4_R2C2_cell |
cAMP_binds_A2
cell
|
MassAction | cAMP3_R2C2_cell+cAMP_cellcAMP4_R2C2_cell |
|
|
reaction rate (J): (((Kf * cAMP3_R2C2_cell) * cAMP_cell) - (Kr * cAMP4_R2C2_cell))[uM.s-1]
forward rate constant (Kf): 75.0[s-1.uM-1] reverse rate constant (Kr): 32.5[s-1] |
|
MAPKK_cellMAPKK_Ser_cell |
BRaf_act_MAPKK
cell
|
HMMIrreversible | MAPKK_cellMAPKK_Ser_cell |
|
|
reaction rate (J): ((Vmax * MAPKK_cell) / (Km + MAPKK_cell))[uM.s-1]
Km (1/2 max) (Km): 0.159[uM] max reaction rate (Vmax): (kcat * BRaf_star_cell)[uM.s-1] user defined (kcat): 0.105[s-1] |
|
Rap1_GDP_GM+Epac_cAMP_cellRap1_Epac_GM |
8a: Rap1-Epac binding
GM
|
MassAction | Rap1_GDP_GM+Epac_cAMP_cellRap1_Epac_GM |
|
|
reaction rate (J): (((Kf_8a__Rap1_Epac_binding * Rap1_GDP_GM) * Epac_cAMP_cell) - (Kr_8a__Rap1_Epac_binding * Rap1_Epac_GM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf_8a__Rap1_Epac_binding): 2.0[s-1.uM-1] reverse rate constant (Kr_8a__Rap1_Epac_binding): 0.8[s-1] |
|
cAMP_cell+Epac_cellEpac_cAMP_cell |
Epac-cAMP binding
cell
|
MassAction | cAMP_cell+Epac_cellEpac_cAMP_cell |
|
|
reaction rate (J): (((Kf_06__Epac_cAMP_binding * cAMP_cell) * Epac_cell) - (Kr_06__Epac_cAMP_binding * Epac_cAMP_cell))[uM.s-1]
forward rate constant (Kf_06__Epac_cAMP_binding): 32.0[s-1.uM-1] reverse rate constant (Kr_06__Epac_cAMP_binding): 96.0[s-1] |
|
G_bg_PM+GRK_cellGRK_Gbg_PM |
GRK-Gbg binding
PM
|
MassAction | G_bg_PM+GRK_cellGRK_Gbg_PM |
|
|
reaction rate (J): (((Kf * G_bg_PM) * GRK_cell) - (Kr * GRK_Gbg_PM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf): 1.0[s-1.uM-1] reverse rate constant (Kr): 0.25[s-1] |
|
MAPK_Thr_cellMAPK_cell |
MKPp_decat_MAPKtyr
cell
|
HMMIrreversible | MAPK_Thr_cellMAPK_cell |
|
|
reaction rate (J): ((Vmax * MAPK_Thr_cell) / (Km + MAPK_Thr_cell))[uM.s-1]
Km (1/2 max) (Km): 0.067[uM] max reaction rate (Vmax): (kcat * MKP1p_cell)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
MAPK_thr_nucleusMAPK_nucleus |
MKP1p deact MAPKtyr
nucleus
|
HMMIrreversible | MAPK_thr_nucleusMAPK_nucleus |
|
|
reaction rate (J): ((Vmax * MAPK_thr_nucleus) / (Km + MAPK_thr_nucleus))[uM.s-1]
Km (1/2 max) (Km): 0.0667[uM] max reaction rate (Vmax): (kcat * MKP1p_nucleus)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
Gsa_GDP_PM+G_bg_PMGs_trimer_PM |
14b: Gs trimerization
PM
|
MassAction | Gsa_GDP_PM+G_bg_PMGs_trimer_PM |
|
|
reaction rate (J): (((Kf_14b__Gs_trimerization * Gsa_GDP_PM) * G_bg_PM) - (Kr_14b__Gs_trimerization * Gs_trimer_PM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf_14b__Gs_trimerization): 0.006[um2.s-1.molecules-1] reverse rate constant (Kr_14b__Gs_trimerization): 0.0[s-1] |
|
PTPSL_cellPTPSL_star_cell |
PKA_deact_PTPSL
cell
|
HMMIrreversible | PTPSL_cellPTPSL_star_cell |
|
|
reaction rate (J): ((Vmax * PTPSL_cell) / (Km + PTPSL_cell))[uM.s-1]
Km (1/2 max) (Km): 0.1[uM] max reaction rate (Vmax): (kcat * PKA_cell)[uM.s-1] user defined (kcat): 0.2[s-1] |
|
CREB_nucleusCREB_Ser_nucleus |
MSK_act_CREB
nucleus
|
HMMIrreversible | CREB_nucleusCREB_Ser_nucleus |
|
|
reaction rate (J): ((Vmax * CREB_nucleus) / (Km + CREB_nucleus))[uM.s-1]
Km (1/2 max) (Km): 2.0[uM] max reaction rate (Vmax): (kcat * MSK_active_nucleus)[uM.s-1] user defined (kcat): 1.5[s-1] |
|
cAMP_cellAMP_cell |
PDE_highKm deact cAMP
cell
|
HMMIrreversible | cAMP_cellAMP_cell |
|
|
reaction rate (J): ((Vmax * cAMP_cell) / (Km + cAMP_cell))[uM.s-1]
Km (1/2 max) (Km): 15.0[uM] max reaction rate (Vmax): (kcat * PDE_highKm_cell)[uM.s-1] user defined (kcat): 8.0[s-1] |
|
MSK_active_nucleusMSK_nucleus |
MSK_dephos
nucleus
|
MassAction | MSK_active_nucleusMSK_nucleus |
|
|
reaction rate (J): ((Kf * MSK_active_nucleus) - (Kr * MSK_nucleus))[uM.s-1]
forward rate constant (Kf): 0.04[s-1] reverse rate constant (Kr): 0.0[s-1] |
|
Rap1_GDP_GMRap1_GTP_GM |
constit exch+hydrolysis
GM
|
MassAction | Rap1_GDP_GMRap1_GTP_GM |
|
|
reaction rate (J): ((Kf * Rap1_GDP_GM) - (Kr * Rap1_GTP_GM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf): 3.0E-6[s-1] reverse rate constant (Kr): 8.5E-5[s-1] |
|
CREB_nucleusCREB_Ser_nucleus |
PKA_act_CREB
nucleus
|
HMMIrreversible | CREB_nucleusCREB_Ser_nucleus |
|
|
reaction rate (J): ((Vmax * CREB_nucleus) / (Km + CREB_nucleus))[uM.s-1]
Km (1/2 max) (Km): 17.0[uM] max reaction rate (Vmax): (kcat * PKA_nucleus)[uM.s-1] user defined (kcat): 6.0[s-1] |
|
MAPK_active_cellMAPK_Thr_cell |
MAPK dephosph by PTP
cell
|
HMMIrreversible | MAPK_active_cellMAPK_Thr_cell |
|
|
reaction rate (J): ((Vmax * MAPK_active_cell) / (Km + MAPK_active_cell))[uM.s-1]
Km (1/2 max) (Km): 0.5[uM] max reaction rate (Vmax): (kcat * PTPSL_cell)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
CREB_Ser_nucleusCREB_nucleus |
PP1A_dephos_CREB
nucleus
|
HMMIrreversible | CREB_Ser_nucleusCREB_nucleus |
|
|
reaction rate (J): ((Vmax * CREB_Ser_nucleus) / (Km + CREB_Ser_nucleus))[uM.s-1]
Km (1/2 max) (Km): 3.0[uM] max reaction rate (Vmax): (kcatPP1A * PP1A_nucleus)[uM.s-1] user defined (kcatPP1A): 0.4[s-1] |
|
MAPK_active_nucleusMAPK_thr_nucleus |
MKP1 deact MAPKact
nucleus
|
HMMIrreversible | MAPK_active_nucleusMAPK_thr_nucleus |
|
|
reaction rate (J): ((Vmax * MAPK_active_nucleus) / (Km + MAPK_active_nucleus))[uM.s-1]
Km (1/2 max) (Km): 0.0667[uM] max reaction rate (Vmax): (kcat * MKP1_nucleus)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
MAPK_thr_nucleusMAPK_nucleus |
MKP1 deact MAPKtyr
nucleus
|
HMMIrreversible | MAPK_thr_nucleusMAPK_nucleus |
|
|
reaction rate (J): ((Vmax * MAPK_thr_nucleus) / (Km + MAPK_thr_nucleus))[uM.s-1]
Km (1/2 max) (Km): 0.0667[uM] max reaction rate (Vmax): (kcat * MKP1_nucleus)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
MSK_nucleusMSK_active_nucleus |
reaction2
nucleus
|
HMMIrreversible | MSK_nucleusMSK_active_nucleus |
|
|
reaction rate (J): ((Vmax * MSK_nucleus) / (Km + MSK_nucleus))[uM.s-1]
Km (1/2 max) (Km): 25.0[uM] max reaction rate (Vmax): (10.0 * MAPK_active_nucleus)[uM.s-1] |
|
MAPK_active_nucleusMAPK_thr_nucleus |
MKP2 deact MAPKact
nucleus
|
HMMIrreversible | MAPK_active_nucleusMAPK_thr_nucleus |
|
|
reaction rate (J): ((Vmax * MAPK_active_nucleus) / (Km + MAPK_active_nucleus))[uM.s-1]
Km (1/2 max) (Km): 0.0667[uM] max reaction rate (Vmax): (kcat * MKP2_nucleus)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
cAMP_cell+cAMP2_R2C2_cellcAMP3_R2C2_cell |
cAMP_bind_cAMP2R2C2
cell
|
MassAction | cAMP_cell+cAMP2_R2C2_cellcAMP3_R2C2_cell |
|
|
reaction rate (J): (((Kf * cAMP_cell) * cAMP2_R2C2_cell) - (Kr * cAMP3_R2C2_cell))[uM.s-1]
forward rate constant (Kf): 75.0[s-1.uM-1] reverse rate constant (Kr): 110.0[s-1] |
|
MAPK_thr_nucleusMAPK_nucleus |
MKP2 deact MAPK tyr
nucleus
|
HMMIrreversible | MAPK_thr_nucleusMAPK_nucleus |
|
|
reaction rate (J): ((Vmax * MAPK_thr_nucleus) / (Km + MAPK_thr_nucleus))[uM.s-1]
Km (1/2 max) (Km): 0.0667[uM] max reaction rate (Vmax): (kcat * MKP2_nucleus)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
MKP1_nucleusMKP1p_nucleus |
MKP1 phosph by MAPKactive_nucleus
nucleus
|
HMMIrreversible | MKP1_nucleusMKP1p_nucleus |
|
|
reaction rate (J): ((Vmax * MKP1_nucleus) / (Km + MKP1_nucleus))[uM.s-1]
Km (1/2 max) (Km): 25.641[uM] max reaction rate (Vmax): (kcat * MAPK_active_nucleus)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
MKP1p_nucleusMKP1_nucleus |
MKP1 dephosph in nucleus
nucleus
|
MassAction | MKP1p_nucleusMKP1_nucleus |
|
|
reaction rate (J): ((Kf * MKP1p_nucleus) - (Kr * MKP1_nucleus))[uM.s-1]
forward rate constant (Kf): 1.0E-4[s-1] reverse rate constant (Kr): 0.0[s-1] |
|
MAPK_active_cellMAPK_Thr_cell |
MKP1_deact_MAPKactive
cell
|
HMMIrreversible | MAPK_active_cellMAPK_Thr_cell |
|
|
reaction rate (J): ((Vmax * MAPK_active_cell) / (Km + MAPK_active_cell))[uM.s-1]
Km (1/2 max) (Km): 0.0667[uM] max reaction rate (Vmax): (kcat * MKP1_cell)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
Gs_a_PM+AC_PMAC_Gsa_PM |
04: Gs-AC binding
PM
|
GeneralKinetics | Gs_a_PM+AC_PMAC_Gsa_PM |
|
|
reaction rate (J): ((AC_PM * Kf_04__Gs_AC_binding * Gs_a_PM) - (Kr_04__Gs_AC_binding * AC_Gsa_PM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] user defined (Kf_04__Gs_AC_binding): 1.0[um2.molecules-1.s-1] user defined (Kr_04__Gs_AC_binding): 3.4[s-1] |
|
ATP_cellcAMP_cell |
05b: cAMP production
PM
|
HMMIrreversible | ATP_cellcAMP_cell |
|
|
reaction rate (J): ((Vmax * ATP_cell) / (Km + ATP_cell))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] Km (1/2 max) (Km): 3.15[uM] max reaction rate (Vmax): (kcat * AC_Gsa_PM)[molecules.um-2.s-1] user defined (kcat): 8.5[s-1] |
|
PKI_nucleus+PKA_nucleusinhibitedPKA_nucleus |
PKA inhibition by PKI
nucleus
|
MassAction | PKI_nucleus+PKA_nucleusinhibitedPKA_nucleus |
|
|
reaction rate (J): (((Kf * PKI_nucleus) * PKA_nucleus) - (Kr * inhibitedPKA_nucleus))[uM.s-1]
forward rate constant (Kf): 1.0[s-1.uM-1] reverse rate constant (Kr): 1.0E-4[s-1] |
|
R2C2_cell+cAMP_cellcAMP_R2C2_cell |
cAMP bind R2C2
cell
|
MassAction | R2C2_cell+cAMP_cellcAMP_R2C2_cell |
|
|
reaction rate (J): (((Kf * R2C2_cell) * cAMP_cell) - (Kr * cAMP_R2C2_cell))[uM.s-1]
forward rate constant (Kf): 54.0[s-1.uM-1] reverse rate constant (Kr): 33.0[s-1] |
|
CREB_Ser_nucleusCREB_nucleus |
Pp2A_deact_CREB
nucleus
|
HMMIrreversible | CREB_Ser_nucleusCREB_nucleus |
|
|
reaction rate (J): ((Vmax * CREB_Ser_nucleus) / (Km + CREB_Ser_nucleus))[uM.s-1]
Km (1/2 max) (Km): 15.66[uM] max reaction rate (Vmax): (6.0 * pp2a_nucleus)[uM.s-1] |
|
beta_isop_PM+Gs_trimer_PMbetaAR_Gs_PM |
2: ARbeta-Gs binding
PM
|
MassAction | beta_isop_PM+Gs_trimer_PMbetaAR_Gs_PM |
|
|
reaction rate (J): (((Kf_2__ARbeta_Gs_binding * beta_isop_PM) * Gs_trimer_PM) - (Kr_2__ARbeta_Gs_binding * betaAR_Gs_PM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf_2__ARbeta_Gs_binding): 0.01[um2.s-1.molecules-1] reverse rate constant (Kr_2__ARbeta_Gs_binding): 0.1[s-1] |
|
MKP1gene_nucleusMKP1_RNA_nucleus |
MAPK_act_MKPtranscription
nucleus
|
HMMIrreversible | MKP1gene_nucleusMKP1_RNA_nucleus |
|
|
reaction rate (J): ((Vmax * MKP1gene_nucleus) / (Km + MKP1gene_nucleus))[uM.s-1]
Km (1/2 max) (Km): 4.0[uM] max reaction rate (Vmax): (kcat * MAPK_active_nucleus)[uM.s-1] user defined (kcat): 3.0E-4[s-1] |
|
cAMP_cellAMP_cell |
PDEstar_deact_cAMP
cell
|
HMMIrreversible | cAMP_cellAMP_cell |
|
|
reaction rate (J): ((Vmax * cAMP_cell) / (Km + cAMP_cell))[uM.s-1]
Km (1/2 max) (Km): 1.3[uM] max reaction rate (Vmax): (20.0 * PDE_star_cell)[uM.s-1] |
|
beta_isop_PMbeta_P_PM |
03: GRK activity
PM
|
GeneralKinetics | beta_isop_PMbeta_P_PM |
|
|
reaction rate (J_3__GRK_activity): ((beta_isop_PM * GRK_PM * kCATgrk / (KM + beta_isop_PM)) - (beta_P_PM * kdephos))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] user defined (KM): 250.0[molecules.um-2] user defined (kdephos): 0.0[s-1] user defined (kCATgrk): 0.204[s-1] |
|
cAMP4_R2C_cellcAMP4_R2_cell+PKA_cell |
Release of C2
cell
|
MassAction | cAMP4_R2C_cellcAMP4_R2_cell+PKA_cell |
|
|
reaction rate (J): ((Kf * cAMP4_R2C_cell) - ((Kr * cAMP4_R2_cell) * PKA_cell))[uM.s-1]
forward rate constant (Kf): 0.6[s-1] reverse rate constant (Kr): 0.18[s-1.uM-1] |
|
MKP1gene_nucleusMKP1_RNA_nucleus |
MKP1 basal transcription
nucleus
|
MassAction | MKP1gene_nucleusMKP1_RNA_nucleus |
|
|
reaction rate (J): ((Kf * MKP1gene_nucleus) - (Kr * MKP1_RNA_nucleus))[uM.s-1]
forward rate constant (Kf): 2.0E-6[s-1] reverse rate constant (Kr): 0.0[s-1] |
|
Rap1GAP_cell+Rap1_GTP_GMRap1_RGII_GM |
10a: Rap1-RGII binding
GM
|
MassAction | Rap1GAP_cell+Rap1_GTP_GMRap1_RGII_GM |
|
|
reaction rate (J): (((Kf_10a__Rap1_RGII_binding * Rap1GAP_cell) * Rap1_GTP_GM) - (Kr_10a__Rap1_RGII_binding * Rap1_RGII_GM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf_10a__Rap1_RGII_binding): 0.62[s-1.uM-1] reverse rate constant (Kr_10a__Rap1_RGII_binding): 8.7[s-1] |
|
MKP1_cell |
MKP1 turnover
cell
|
MassAction | MKP1_cell |
|
|
reaction rate (J): (Kf * MKP1_cell)[uM.s-1]
forward rate constant (Kf): 3.7E-4[s-1] reverse rate constant (Kr): 0.0[uM.s-1] |
|
cAMP_R2C2_cell+cAMP_cellcAMP2_R2C2_cell |
cAMP_binds_cAMPR2C2
cell
|
MassAction | cAMP_R2C2_cell+cAMP_cellcAMP2_R2C2_cell |
|
|
reaction rate (J): (((Kf * cAMP_R2C2_cell) * cAMP_cell) - (Kr * cAMP2_R2C2_cell))[uM.s-1]
forward rate constant (Kf): 54.0[s-1.uM-1] reverse rate constant (Kr): 33.0[s-1] |
|
Gs_a_PMGsa_GDP_PM |
Gs GTPase
PM
|
GeneralKinetics | Gs_a_PMGsa_GDP_PM |
|
|
reaction rate (J): (Gs_a_PM * Kcat)[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] user defined (Kcat): 0.11[s-1] |
|
Rap1_RGII_GMRap1_GDP_GM+Rap1GAP_cell |
10: Rap1 GTPase
GM
|
GeneralKinetics | Rap1_RGII_GMRap1_GDP_GM+Rap1GAP_cell |
|
|
reaction rate (J_10__Rap1_GTPase): (kcat * Rap1_RGII_GM)[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] user defined (kcat): 8.0[s-1] |
|
MAPKK_Ser_cellMAPKK_cell |
PP2A_inact_MAPKKSer
cell
|
HMMIrreversible | MAPKK_Ser_cellMAPKK_cell |
|
|
reaction rate (J): ((Vmax * MAPKK_Ser_cell) / (Km + MAPKK_Ser_cell))[uM.s-1]
Km (1/2 max) (Km): 15.66[uM] max reaction rate (Vmax): (kcat * PP2A_cell)[uM.s-1] user defined (kcat): 6.0[s-1] |
|
MAPK_cellMAPK_Thr_cell |
MAPKK_act_MAPK
cell
|
HMMIrreversible | MAPK_cellMAPK_Thr_cell |
|
|
reaction rate (J): ((Vmax * MAPK_cell) / (Km + MAPK_cell))[uM.s-1]
Km (1/2 max) (Km): 0.046296[uM] max reaction rate (Vmax): (kcat * MAPKK_active_cell)[uM.s-1] user defined (kcat): 0.15[s-1] |
|
MKP1_RNA_cellMKP1_cell |
MKP_translation
cell
|
MassAction | MKP1_RNA_cellMKP1_cell |
|
|
reaction rate (J): ((Kf * MKP1_RNA_cell) - (Kr * MKP1_cell))[uM.s-1]
forward rate constant (Kf): 0.004[s-1] reverse rate constant (Kr): 0.0[s-1] |
|
MAPKK_Ser_cellMAPKK_active_cell |
reaction1
cell
|
GeneralKinetics | MAPKK_Ser_cellMAPKK_active_cell |
|
|
reaction rate (J): (Vmax * MAPKK_Ser_cell / (Km + MAPKK_Ser_cell))[uM.s-1]
user defined (Km): 0.159[uM] user defined (Vmax): (kcat * BRaf_star_cell)[uM.s-1] user defined (kcat): 0.105[s-1] |
|
PDE_star_cellPDE_cell |
PP2A_dephos_PDEstar
cell
|
HMMIrreversible | PDE_star_cellPDE_cell |
|
|
reaction rate (J): ((Vmax * PDE_star_cell) / (Km + PDE_star_cell))[uM.s-1]
Km (1/2 max) (Km): 0.96[uM] max reaction rate (Vmax): (0.77 * PDE_PP_cell)[uM.s-1] |
|
GRK_Gbg_PMGRK_PM+G_bg_PM |
GRK PM recruitment
PM
|
MassAction | GRK_Gbg_PMGRK_PM+G_bg_PM |
|
|
reaction rate (J): ((Kf_GRK_PM_recruitment * GRK_Gbg_PM) - ((Kr_GRK_PM_recruitment * GRK_PM) * G_bg_PM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf_GRK_PM_recruitment): 1.0[s-1] reverse rate constant (Kr_GRK_PM_recruitment): 1.0E-4[um2.s-1.molecules-1] |
|
MAPK_Thr_cellMAPK_cell |
reaction0
cell
|
HMMIrreversible | MAPK_Thr_cellMAPK_cell |
|
|
reaction rate (J): ((Vmax * MAPK_Thr_cell) / (Km + MAPK_Thr_cell))[uM.s-1]
Km (1/2 max) (Km): 0.06667[uM] max reaction rate (Vmax): MKP2_cell[uM.s-1] |
|
MAPK_active_cellMAPK_Thr_cell |
reaction3
cell
|
HMMIrreversible | MAPK_active_cellMAPK_Thr_cell |
|
|
reaction rate (J): ((Vmax * MAPK_active_cell) / (Km + MAPK_active_cell))[uM.s-1]
Km (1/2 max) (Km): 0.06667[uM] max reaction rate (Vmax): MKP2_cell[uM.s-1] |
|
MAPK_Thr_cellMAPK_cell |
MKP_decat_MAPKtyr
cell
|
HMMIrreversible | MAPK_Thr_cellMAPK_cell |
|
|
reaction rate (J): ((Vmax * MAPK_Thr_cell) / (Km + MAPK_Thr_cell))[uM.s-1]
Km (1/2 max) (Km): 0.067[uM] max reaction rate (Vmax): (kcat * MKP1_cell)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
MAPKK_Ser_cellMAPKK_active_cell |
RapRaf_act_MAPKKSer
GM
|
HMMIrreversible | MAPKK_Ser_cellMAPKK_active_cell |
|
|
reaction rate (J): ((Vmax * MAPKK_Ser_cell) / (Km + MAPKK_Ser_cell))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] Km (1/2 max) (Km): 0.4[uM] max reaction rate (Vmax): (kcat * Rap1_BRaf_GM)[molecules.um-2.s-1] user defined (kcat): 0.95[s-1] |
|
MKP1p_cell |
MKP1p turnover
cell
|
MassAction | MKP1p_cell |
|
|
reaction rate (J): (Kf * MKP1p_cell)[uM.s-1]
forward rate constant (Kf): 1.0E-4[s-1] reverse rate constant (Kr): 0.0[uM.s-1] |
|
MKP1p_cellMKP1_cell |
MKP1 dephosph
cell
|
MassAction | MKP1p_cellMKP1_cell |
|
|
reaction rate (J): ((Kf * MKP1p_cell) - (Kr * MKP1_cell))[uM.s-1]
forward rate constant (Kf): 1.0E-4[s-1] reverse rate constant (Kr): 0.0[s-1] |
|
MAPK_active_cellMAPK_Thr_cell |
MKP1p_deact_MAPKactive
cell
|
HMMIrreversible | MAPK_active_cellMAPK_Thr_cell |
|
|
reaction rate (J): ((Vmax * MAPK_active_cell) / (Km + MAPK_active_cell))[uM.s-1]
Km (1/2 max) (Km): 0.0667[uM] max reaction rate (Vmax): (kcat * MKP1p_cell)[uM.s-1] user defined (kcat): 1.0[s-1] |
|
betaAR_Gs_PMbeta_isop_PM+Gs_a_PM+G_bg_PM |
02b: Gs activation
PM
|
MassAction | betaAR_Gs_PMbeta_isop_PM+Gs_a_PM+G_bg_PM |
|
|
reaction rate (J): ((Kf * betaAR_Gs_PM) - (((Kr * beta_isop_PM) * Gs_a_PM) * G_bg_PM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf): 0.025[s-1] reverse rate constant (Kr): 0.0[um4.s-1.molecules-2] |
|
BRaf_cell+Rap1_GTP_GMRap1_BRaf_GM |
Rap1_binds_BRaf
GM
|
MassAction | BRaf_cell+Rap1_GTP_GMRap1_BRaf_GM |
|
|
reaction rate (J): (((Kf * BRaf_cell) * Rap1_GTP_GM) - (Kr * Rap1_BRaf_GM))[molecules.um-2.s-1]
inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 0.0[1] forward rate constant (Kf): 4.0[s-1.uM-1] reverse rate constant (Kr): 10.0[s-1] |
Name |
Type
Electrical (Membrane Polarity)
|
---|---|
cell |
Compartment
(+) (-)
|
|
|
ec |
Compartment
(+) (-)
|
|
|
golgi |
Compartment
(+) (-)
|
|
|
nucleus |
Compartment
(+) (-)
|
|
|
GM |
Membrane
N/A
|
|
|
PM |
Membrane
N/A
|
|
|
nuclear membrane |
Membrane
N/A
|
|
|
Name | Structure | BioNetGen Definition |
---|---|---|
MSK_nucleus | nucleus | |
|
|
|
R2C2_cell | cell | |
|
|
|
ATP_cell | cell | |
|
|
|
MKP1_cell | cell | |
|
|
|
MSK_active_nucleus | nucleus | |
|
|
|
AMP_cell | cell | |
|
|
|
BRaf_cell | cell | |
|
|
|
MAPK_act_cell | cell | |
|
|
|
cAMP4_R2C2_cell | cell | |
|
|
|
cAMP4_R2C_cell | cell | |
|
|
|
cAMP4_R2_cell | cell | |
|
|
|
MAPK_nucleus | nucleus | |
|
|
|
MKP1_nucleus | nucleus | |
|
|
|
MKP2_nucleus | nucleus | |
|
|
|
MAPK_thr_nucleus | nucleus | |
|
|
|
MKP1p_cell | cell | |
|
|
|
MKP1p_nucleus | nucleus | |
|
|
|
MKP2_cell | cell | |
|
|
|
G_bg_PM | PM | |
|
|
|
Rap1_RGII_GM | GM | |
|
|
|
Gsa_GDP_PM | PM | |
|
|
|
beta_isop_PM | PM | |
|
|
|
PDE_star_cell | cell | |
|
|
|
isoprenaline_ec | ec | |
|
|
|
MKP1gene_nucleus | nucleus | |
|
|
|
PP2A_cell | cell | |
|
|
|
MAPK_active_nucleus | nucleus | |
|
|
|
cAMP_R2C2_cell | cell | |
|
|
|
Rap1_GDP_GM | GM | |
|
|
|
beta_PM | PM | |
|
|
|
Epac_cAMP_cell | cell | |
|
|
|
beta_P_PM | PM | |
|
|
|
Rap1_Epac_GM | GM | |
|
|
|
MKP1_RNA_nucleus | nucleus | |
|
|
|
cAMP2_R2C2_cell | cell | |
|
|
|
PKA_cell | cell | |
|
|
|
MAPKK_Ser_cell | cell | |
|
|
|
PKI_cell | cell | |
|
|
|
inhibitedPKA_nucleus | nucleus | |
|
|
|
inhibitedPKA_cell | cell | |
|
|
|
Gs_trimer_PM | PM | |
|
|
|
GRK_Gbg_PM | PM | |
|
|
|
Gs_a_PM | PM | |
|
|
|
MAPK_active_cell | cell | |
|
|
|
Rap1GAP_cell | cell | |
|
|
|
MAPKK_cell | cell | |
|
|
|
cAMP3_R2C2_cell | cell | |
|
|
|
cAMP_cell | cell | |
|
|
|
PP1_cell | cell | |
|
|
|
PP1A_nucleus | nucleus | |
|
|
|
CREB_Ser_nucleus | nucleus | |
|
|
|
PTPSL_star_cell | cell | |
|
|
|
Epac_cell | cell | |
|
|
|
MKP1_RNA_cell | cell | |
|
|
|
Rap1_BRaf_GM | GM | |
|
|
|
MAPKK_active_cell | cell | |
|
|
|
PKI_nucleus | nucleus | |
|
|
|
GRK_cell | cell | |
|
|
|
AC_PM | PM | |
|
|
|
AC_Gsa_PM | PM | |
|
|
|
PDE_cell | cell | |
|
|
|
Rap1_GTP_GM | GM | |
|
|
|
pp2a_nucleus | nucleus | |
|
|
|
CREB_nucleus | nucleus | |
|
|
|
PTPSL_cell | cell | |
|
|
|
MAPK_Thr_cell | cell | |
|
|
|
PDE_PP_cell | cell | |
|
|
|
PDE_highKm_cell | cell | |
|
|
|
GRK_PM | PM | |
|
|
|
betaAR_Gs_PM | PM | |
|
|
|
BRaf_star_cell | cell | |
|
|
|
PKA_nucleus | nucleus | |
|
|
|
MAPK_cell | cell | |
|
|
Name | Text Annotations | BioNetGen Definition |
---|
Name |
Type
Count
|
BioNetGen Definition |
---|
Applications
Name | Math Type | Annotation |
---|---|---|
Compart | Deterministic (ODE) Compartmental | cloned from 'Compart' owned by user eungdamr cloned from 'Compart' owned by user argh |
Application - Compart
Species | Initial Condition | Diffusion Constant | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R2C2_cell | 0.2 [uM] | 0.0
[um2/s] ATP_cell |
4000.0
[uM]
|
0.0
[um2/s] | MKP1_cell |
3.6E-4
[uM]
|
0.0
[um2/s] | AMP_cell |
1.0E-6
[uM]
|
0.0
[um2/s] | BRaf_cell |
0.2
[uM]
|
0.0
[um2/s] | MAPK_act_cell |
0.0
[uM]
|
0.0
[um2/s] | cAMP4_R2C2_cell |
0.0
[uM]
|
0.0
[um2/s] | cAMP4_R2C_cell |
0.0
[uM]
|
0.0
[um2/s] | cAMP4_R2_cell |
0.0
[uM]
|
0.0
[um2/s] | MKP1p_cell |
0.0
[uM]
|
0.0
[um2/s] | MKP2_cell |
0.001
[uM]
|
0.0
[um2/s] | PDE_star_cell |
0.0
[uM]
|
0.0
[um2/s] | PP2A_cell |
0.075
[uM]
|
0.0
[um2/s] | cAMP_R2C2_cell |
0.0
[uM]
|
0.0
[um2/s] | Epac_cAMP_cell |
1.0E-6
[uM]
|
0.0
[um2/s] | cAMP2_R2C2_cell |
0.0
[uM]
|
0.0
[um2/s] | PKA_cell |
0.0
[uM]
|
0.0
[um2/s] | MAPKK_Ser_cell |
1.0E-6
[uM]
|
0.0
[um2/s] | PKI_cell |
0.4
[uM]
|
0.0
[um2/s] | inhibitedPKA_cell |
0.0
[uM]
|
0.0
[um2/s] | MAPK_active_cell |
0.0
[uM]
|
0.0
[um2/s] | Rap1GAP_cell |
0.15
[uM]
|
0.0
[um2/s] | MAPKK_cell |
0.18
[uM]
|
0.0
[um2/s] | cAMP3_R2C2_cell |
0.0
[uM]
|
0.0
[um2/s] | cAMP_cell |
1.0E-4
[uM]
|
0.0
[um2/s] | PP1_cell |
0.04
[uM]
|
0.0
[um2/s] | PTPSL_star_cell |
0.0
[uM]
|
0.0
[um2/s] | Epac_cell |
0.16
[uM]
|
0.0
[um2/s] | MKP1_RNA_cell |
4.0E-5
[uM]
|
0.0
[um2/s] | MAPKK_active_cell |
1.0E-6
[uM]
|
0.0
[um2/s] | GRK_cell |
0.045
[uM]
|
0.0
[um2/s] | PDE_cell |
0.4
[uM]
|
0.0
[um2/s] | PTPSL_cell |
0.01
[uM]
|
0.0
[um2/s] | MAPK_Thr_cell |
0.0
[uM]
|
0.0
[um2/s] | PDE_PP_cell |
0.2
[uM]
|
0.0
[um2/s] | PDE_highKm_cell |
0.5
[uM]
|
0.0
[um2/s] | BRaf_star_cell |
0.0
[uM]
|
0.0
[um2/s] | MAPK_cell |
0.263
[uM]
|
0.0
[um2/s] | isoprenaline_ec |
10.0
[uM]
|
0.0
[um2/s] | MSK_nucleus |
0.1
[uM]
|
0.0
[um2/s] | MSK_active_nucleus |
0.0
[uM]
|
0.0
[um2/s] | MAPK_nucleus |
0.233
[uM]
|
0.0
[um2/s] | MKP1_nucleus |
2.2E-4
[uM]
|
0.0
[um2/s] | MKP2_nucleus |
1.0E-4
[uM]
|
0.0
[um2/s] | MAPK_thr_nucleus |
0.0
[uM]
|
0.0
[um2/s] | MKP1p_nucleus |
0.0
[uM]
|
0.0
[um2/s] | MKP1gene_nucleus |
0.2
[uM]
|
0.0
[um2/s] | MAPK_active_nucleus |
0.0
[uM]
|
0.0
[um2/s] | MKP1_RNA_nucleus |
6.5E-7
[uM]
|
0.0
[um2/s] | inhibitedPKA_nucleus |
0.0
[uM]
|
0.0
[um2/s] | PP1A_nucleus |
0.04
[uM]
|
0.0
[um2/s] | CREB_Ser_nucleus |
0.0
[uM]
|
0.0
[um2/s] | PKI_nucleus |
0.0
[uM]
|
0.0
[um2/s] | pp2a_nucleus |
0.05
[uM]
|
0.0
[um2/s] | CREB_nucleus |
0.3
[uM]
|
0.0
[um2/s] | PKA_nucleus |
0.0
[uM]
|
0.0
[um2/s] | Rap1_RGII_GM |
0.0
[uM]
|
0.0
[um2/s] | Rap1_GDP_GM |
100.0
[uM]
|
0.0
[um2/s] | Rap1_Epac_GM |
0.0
[uM]
|
0.0
[um2/s] | Rap1_BRaf_GM |
0.0
[uM]
|
0.0
[um2/s] | Rap1_GTP_GM |
0.0
[uM]
|
0.0
[um2/s] | G_bg_PM |
0.0
[uM]
|
0.0
[um2/s] | Gsa_GDP_PM |
1.0E-6
[uM]
|
0.0
[um2/s] | beta_isop_PM |
1.0E-6
[uM]
|
0.0
[um2/s] | beta_PM |
33.0
[uM]
|
0.0
[um2/s] | beta_P_PM |
1.0E-6
[uM]
|
0.0
[um2/s] | Gs_trimer_PM |
100.0
[uM]
|
0.0
[um2/s] | GRK_Gbg_PM |
0.0
[uM]
|
0.0
[um2/s] | Gs_a_PM |
1.0E-6
[uM]
|
0.0
[um2/s] | AC_PM |
100.0
[uM]
|
0.0
[um2/s] | AC_Gsa_PM |
1.0E-6
[uM]
|
0.0
[um2/s] | GRK_PM |
1.0E-6
[uM]
|
0.0
[um2/s] | betaAR_Gs_PM |
0.0
[uM]
|
0.0
[um2/s]
|
|
Name | Reaction Mapping |
---|---|
PP_deact_BRaf | included |
PKA_act_BRaf | included |
GRK to cytosol | included |
08: Epac exchange | included |
Release of C1 | included |
Rap1raf_act_MAPKK | included |
MKP1 phospho by MAPKactive | included |
MKP1p turnover nucleus | included |
07: PDE | included |
MKP1p deact MAPKact | included |
MKP1 turnover in nucleus | included |
01b: isoprenaline binding | included |
PTPSL_dephos | included |
MAPKK_act_MAPK_thr | included |
Receptor recycling | included |
PKA_act_PDE | included |
PP2A_inact_MAPKK_active | included |
PKA release by PKI | included |
cAMP_binds_A2 | included |
BRaf_act_MAPKK | included |
8a: Rap1-Epac binding | included |
Epac-cAMP binding | included |
GRK-Gbg binding | included |
MKPp_decat_MAPKtyr | included |
MKP1p deact MAPKtyr | included |
14b: Gs trimerization | included |
PKA_deact_PTPSL | included |
MSK_act_CREB | included |
PDE_highKm deact cAMP | included |
MSK_dephos | included |
constit exch+hydrolysis | included |
PKA_act_CREB | included |
MAPK dephosph by PTP | included |
PP1A_dephos_CREB | included |
MKP1 deact MAPKact | included |
MKP1 deact MAPKtyr | included |
reaction2 | included |
MKP2 deact MAPKact | included |
cAMP_bind_cAMP2R2C2 | included |
MKP2 deact MAPK tyr | included |
MKP1 phosph by MAPKactive_nucleus | included |
MKP1 dephosph in nucleus | included |
MKP1_deact_MAPKactive | included |
04: Gs-AC binding | included |
05b: cAMP production | included |
PKA inhibition by PKI | included |
cAMP bind R2C2 | included |
Pp2A_deact_CREB | included |
2: ARbeta-Gs binding | included |
MAPK_act_MKPtranscription | included |
PDEstar_deact_cAMP | included |
03: GRK activity | included |
Release of C2 | included |
MKP1 basal transcription | included |
10a: Rap1-RGII binding | included |
MKP1 turnover | included |
cAMP_binds_cAMPR2C2 | included |
Gs GTPase | included |
10: Rap1 GTPase | included |
PP2A_inact_MAPKKSer | included |
MAPKK_act_MAPK | included |
MKP_translation | included |
reaction1 | included |
PP2A_dephos_PDEstar | included |
GRK PM recruitment | included |
reaction0 | included |
reaction3 | included |
MKP_decat_MAPKtyr | included |
RapRaf_act_MAPKKSer | included |
MKP1p turnover | included |
MKP1 dephosph | included |
MKP1p_deact_MAPKactive | included |
02b: Gs activation | included |
Rap1_binds_BRaf | included |
PKI translocation | included |
MKP1p translocation | included |
MAPK translocation | included |
MKP1 translocation | included |
MAPKactive_translocation | included |
PKA_translocation | included |
inhibited PKA export | included |
MKPRNA_export | included |
Name | End Time | Output Options |
---|---|---|
iso | 3000.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
rpcamp | 3000.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
U0126 | 3000.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
baseline | 30000.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Rolipram + U0216 | 3000.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Rolipram2 | 3000.0 [s] |
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Copy of iso | 3000.0 [s] |
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Removal of EPAC | 2700.0 [s] |
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Removal of bRaf activation by PKA | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Iso 2 | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of PKA | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of PKA deact PTP | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of MSK | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of PKI inhibition | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of PKA act CREB | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of bRaf->MEK | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal MEK->MAPK | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of PTP-|MAPK | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of PKA import | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Removal of MAPK import | 2700.0 [s] |
OutputTimes 0.0,0.01,0.02,0.03,0.04,0.05,0.06,0.07,0.08,0.09,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1.0,1.1,1.2,1.3,1.4,1.5,1.6,1.7,1.8,1.9,2.0,2.1,2.2,2.3,2.4,2.5,2.6,2.7,2.8,2.9,3.0,3.1,3.2,3.3,3.4,3.5,3.6,3.7,3.8,3.9,4.0,4.1,4.2,4.3,4.4,4.5,4.6,4.7,4.8,4.9,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,65.0,70.0,75.0,80.0,85.0,90.0,95.0,100.0,105.0,110.0,115.0,120.0,125.0,130.0,135.0,140.0,145.0,150.0,155.0,160.0,165.0,170.0,175.0,180.0,185.0,190.0,195.0,200.0,205.0,210.0,215.0,220.0,225.0,230.0,235.0,240.0,245.0,250.0,255.0,260.0,265.0,270.0,275.0,280.0,285.0,290.0,295.0,300.0,330.0,360.0,390.0,420.0,450.0,480.0,510.0,540.0,570.0,600.0,630.0,660.0,690.0,720.0,750.0,780.0,810.0,840.0,870.0,900.0,930.0,960.0,990.0,1020.0,1050.0,1080.0,1110.0,1140.0,1170.0,1200.0,1230.0,1260.0,1290.0,1320.0,1350.0,1380.0,1410.0,1440.0,1470.0,1500.0,1530.0,1560.0,1590.0,1620.0,1650.0,1680.0,1710.0,1740.0,1770.0,1800.0,1830.0,1860.0,1890.0,1920.0,1950.0,1980.0,2010.0,2040.0,2070.0,2100.0,2130.0,2160.0,2190.0,2220.0,2250.0,2280.0,2310.0,2340.0,2370.0,2400.0,2430.0,2460.0,2490.0,2520.0,2550.0,2580.0,2610.0,2640.0,2670.0,2700.0,2730.0,2760.0,2790.0,2820.0,2850.0,2880.0,2910.0,2940.0,2970.0,3000.0 |
Dimension | Type | Subdomain | Adjacent Subvolumes | Size | Mapped Compartment |
---|---|---|---|---|---|
Compartmental | Compartment | nuclear membrane |
Global Parameters
Name | Expression |
---|---|
kimportPKI | 0.001[um.s-1] |
|
|
Km_Rap1BRaf | 0.5[uM] |
|
|
kcat_Rap1Braf | 0.105[s-1] |
|
|