Reaction Diagram
Physiology
| Universal ID's | Text Annotations |
|---|---|
|
|
|
| Reaction |
Name
Structure
|
Kinetics | Depiction |
|---|---|---|---|
| RRP |
R_phosphorylation
c0
|
GeneralKinetics | RRP |
|
|
|
reaction rate (J): (kf_R_phos * R * S)[uM.s-1]
|
|
| RPR |
R_dephosphorylation
c0
|
GeneralKinetics | RPR |
|
|
|
reaction rate (J): (kf_phosp * RP)[uM.s-1]
|
| Name |
Type
Electrical (Membrane Polarity)
|
|---|---|
| c0 |
Compartment
(+) (-)
|
|
|
|
| Name | Structure | BioNetGen Definition |
|---|---|---|
| R | c0 | R(mod~U!-,). |
|
|
|
|
| RP | c0 | R(mod~P!-,). |
|
|
|
|
| S | c0 | S(). |
|
|
|
| Name | Text Annotations | BioNetGen Definition |
|---|---|---|
| R | Text Annotations | R(mod~P~U,) |
|
|
|
|
| S | Text Annotations | S() |
|
|
|
| Name |
Type
Count
|
BioNetGen Definition |
|---|---|---|
| O0_R_tot |
Molecules Multimolecular |
R(mod!?,). |
|
|
|
|
| O0_S_tot |
Molecules Multimolecular |
S(). |
|
|
|
Applications
| Name | Math Type | Annotation |
|---|---|---|
| Hyperbolic | Deterministic (ODE) Compartmental | cloned from 'Hyperbolic' owned by user shreyasinha28 cloned from 'Hyperbolic' owned by user ModelBrick |
Application - Hyperbolic
| Species | Initial Condition | Diffusion Constant | ||||||
|---|---|---|---|---|---|---|---|---|
| R | 1.0 [uM] | 0.0
[um2/s] | RP |
0.0
[uM]
|
0.0
[um2/s] | S |
t
[uM]
|
0.0
[um2/s]
|
|
| Name | Reaction Mapping |
|---|---|
| R_phosphorylation | included |
| R_dephosphorylation | included |
| Name | End Time | Output Options |
|---|---|---|
| Simulation0 | 10.0 [s] |
KeepEvery 1 KeepAtMost 1000 |
| Dimension | Type | Subdomain | Adjacent Subvolumes | Size | Mapped Compartment |
|---|---|---|---|---|---|
| Compartmental | Compartment | c0 |
Global Parameters
| Name | Expression |
|---|---|
| kf_R_phos | 1.0[s-1.uM-1] |
|
|
|
| kf_phosp | 1.0[s-1] |
|
|
|