Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Reactions
Name
Structure
Kinetics
R RP R_phosphorylation c0 GeneralKinetics
RP R R_dephosphorylation c0 GeneralKinetics

Structures

Name
Type
Electrical
c0 Compartment (+)   (-)

Species

Name
Structure
BioNetGen Definition
Depiction
R c0 R(mod~U!-,).
RP c0 R(mod~P!-,).
S c0 S().

Molecules

Name
BioNetGen Definition
DEPICTION
R R(mod~P~U,)
S S()

Observables

Name
Structure
Count
BNGL Definition
Sequence Type
DEPICTION
O0_R_tot c0 Molecules R(mod!?,). Multimolecular
O0_S_tot c0 Molecules S(). Multimolecular

Applications

Name
Properties Math Type
Hyperbolic Specs - Species
Specs - Reaction
Simulations
Deterministic (ODE) Compartmental

Specifications (Species) - Hyperbolic go to Simulations

Species
Initial Condition
Diffusion Constant
R 1.0 0.0 [um2/s]
RP 0.0 0.0 [um2/s]
S t 0.0 [um2/s]

Specifications (Reaction) - Hyperbolic go to Simulations

Name
Enabled?
R_phosphorylation included
R_dephosphorylation included

Simulations - Hyperbolic go to Specifications

Name
End Time
Output Options
Simulation0 10.0

KeepEvery 1

KeepAtMost 1000

Global Parameters

Name
Expression
kf_R_phos 1.0[s-1.uM-1]
kf_phosp 1.0[s-1]

Downloads

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VCML VCML File
BNGL
MatLab
SBML
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SEDML