Reaction Diagram
Physiology
Universal ID's | Text Annotations |
---|---|
|
|
Reaction |
Name
Structure
|
Kinetics | Depiction |
---|---|---|---|
P90RskP90Rsk_act |
P90Rsk_Activation
cell
|
GeneralKinetics | P90RskP90Rsk_act |
|
|
reaction rate (J): (Kcat * Erk_act * P90Rsk / (km_act_P90Rsk + P90Rsk))[mmol.ml-1.min-1]
user defined (Kcat): 0.0213697[min-1] |
|
P90Rsk_actP90Rsk |
P90Rsk_Deactivation
cell
|
GeneralKinetics | P90Rsk_actP90Rsk |
|
|
reaction rate (J): (k1_dact_P90Rsk * P90Rsk_act)[mmol.ml-1.min-1]
|
Name |
Type
Electrical (Membrane Polarity)
|
---|---|
cell |
Compartment
(+) (-)
|
|
|
Name | Structure | BioNetGen Definition |
---|---|---|
Erk_act | cell | ERK(Active~yes!-,). |
|
|
|
P90Rsk_act | cell | P90Rsk(Active~yes!-,). |
|
|
|
P90Rsk | cell | P90Rsk(Active~no!-,). |
|
|
Name | Text Annotations | BioNetGen Definition |
---|---|---|
ERK | Text Annotations | ERK(Active~yes~no,) |
|
|
|
P90Rsk | Text Annotations | P90Rsk(Active~yes~no,) |
|
|
Name |
Type
Count
|
BioNetGen Definition |
---|
Applications
Name | Math Type | Annotation |
---|---|---|
Deterministic | Deterministic (ODE) Compartmental | cloned from 'Deterministic' owned by user PraneetDangol cloned from 'Deterministic' owned by user ModelBrick cloned from 'Deterministic' owned by user savi06 cloned from 'Deterministic' owned by user mblinov cloned from 'Deterministic' owned by user cab15130 |
Application - Deterministic
Species | Initial Condition | Diffusion Constant | ||||||
---|---|---|---|---|---|---|---|---|
Erk_act | 0.0 [mmol] | 0.0
[m2/min] P90Rsk_act |
0.0
[mmol]
|
0.0
[m2/min] | P90Rsk |
120000.0
[mmol]
|
0.0
[m2/min]
|
|
Name | Reaction Mapping |
---|---|
P90Rsk_Activation | included |
P90Rsk_Deactivation | included |
Name | End Time | Output Options |
---|
Dimension | Type | Subdomain | Adjacent Subvolumes | Size | Mapped Compartment |
---|---|---|---|---|---|
Compartmental | Compartment | cell |
Global Parameters
Name | Expression |
---|---|
km_act_P90Rsk | 763523.0[mmol.ml-1] |
|
|
k1_dact_P90Rsk | 0.005[min-1] |
|
|