Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Reactions
Name
Structure
Kinetics
P90Rsk P90Rsk_act P90Rsk_Activation cell GeneralKinetics
P90Rsk_act P90Rsk P90Rsk_Deactivation cell GeneralKinetics

P90Rsk_Activation Universal ID's

P90Rsk_Activation Text Annotations

P90Rsk_Deactivation Universal ID's

P90Rsk_Deactivation Text Annotations

Expressions for P90Rsk_Activation

reaction rate

J

(Kcat * Erk_act * P90Rsk / (km_act_P90Rsk + P90Rsk)) [mmol.ml-1.min-1]

user defined

Kcat

0.0213697 [min-1]

Expressions for P90Rsk_Deactivation

reaction rate

J

(k1_dact_P90Rsk * P90Rsk_act) [mmol.ml-1.min-1]

Structures

Name
Type
Electrical
cell Compartment (+)   (-)

cell Universal ID's

cell Text Annotations

Species

Name
Structure
BioNetGen Definition
Depiction
Erk_act cell ERK(Active~yes!-,).
P90Rsk_act cell P90Rsk(Active~yes!-,).
P90Rsk cell P90Rsk(Active~no!-,).

Erk_act Universal ID's

Erk_act Text Annotations

P90Rsk_act Universal ID's

P90Rsk_act Text Annotations

P90Rsk Universal ID's

P90Rsk Text Annotations

Molecules

Name
BioNetGen Definition
DEPICTION
ERK ERK(Active~yes~no,)
P90Rsk P90Rsk(Active~yes~no,)

ERK Universal ID's

ERK Text Annotations

P90Rsk Universal ID's

P90Rsk Text Annotations

Observables

Name
Structure
Count
BNGL Definition
Sequence Type
DEPICTION

Applications

Name
Properties Math Type
Deterministic Specs - Species
Specs - Reaction
Simulations 		Deterministic (ODE) Compartmental

Deterministic Text Annotations

Deterministic Universal ID's

Annotations will come here

RFID | pubmed

Specifications (Species) - Deterministic go to Simulations

Species
Initial Condition
Diffusion Constant
Erk_act 0.0 0.0 [m2/min]
P90Rsk_act 0.0 0.0 [m2/min]
P90Rsk 120000.0 0.0 [m2/min]

Specifications (Reaction) - Deterministic go to Simulations

Name
Enabled?
P90Rsk_Activation included
P90Rsk_Deactivation included

Simulations - Deterministic go to Specifications

Name
End Time
Output Options

Global Parameters

Name
Expression
km_act_P90Rsk 763523.0[mmol.ml-1]
k1_dact_P90Rsk 0.005[min-1]

Universal ID's

Text Annotations

Universal ID's

Text Annotations

Downloads

Format
File
VCML VCML File
BNGL
MatLab
SBML
Formatted XML
SEDML