Dashboard

Name - Boras_PKA-Dual

BioModel ID - 95177642

Reaction Diagram

reactionDiagram

Physiology

Universal ID's Text Annotations

Applications

Applications See in Dashboard
Name Math Type Annotation
test Deterministic (ODE) Compartmental

Application - test

Specifications(Species) - test See in Dashboard
Species Initial Condition Diffusion Constant
cAMP_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_B_B 0.0 [uM] 0.0 [um2/s]
PKA_A_B_C_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_BB_A_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_B_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_B_C_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_BB_A_C_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_C_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_Unnamed_compartment 0.011 [uM] 0.0 [um2/s]
PKA_A_B_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_2C_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_AA_BB_C 0.0 [uM] 0.0 [um2/s]
C_Unnamed_compartment 0.02 [uM] 0.0 [um2/s]
PKA_B_C2_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
PKA_B_A_C2 0.0 [uM] 0.0 [um2/s]
PKA_AA_BB_Unnamed_compartment 0.0 [uM] 0.0 [um2/s]
Specifications(Reaction) - test See in Dashboard
Name Reaction Mapping
reaction21 included
reaction17 included
reaction8 included
r5 included
reaction7 included
r1 included
reaction22 included
r7 included
reaction5 included
reaction11 included
r6 included
r2 included
reaction0 included
r0 included
reaction6 included
r3 included
r4 included
reaction4 included
r8 included
reaction18 included
Simulations - test See in Dashboard
Name End Time Output Options
Simulation0 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Copy of Simulation0 500000.0 [s]

KeepEvery 20

KeepAtMost 6000

C_kr=.23 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

C_kr=23 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

C_kd=.0038 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

C_kd=.000038 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Kf_A=.8 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Kf_A=.008 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Kr_A=.12 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Kr_A=.0012 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Kf_B=.82 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Kf_B=.0082 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Kr_B=.00221 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Kr_B=.0000221 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

Copy of Kr_B=.0000221 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

F_B_binding=31.75 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

F_B_binding=.3175 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

B_factor=50 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

B_factor=.5 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

B_kd=.13 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

B_kd=.0013 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

A_kd=.3 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

A_kd=.003 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

F_A_binding=3 1200.0 [s]

KeepEvery 20

KeepAtMost 6000

F_A_binding=.03 2000.0 [s]

KeepEvery 20

KeepAtMost 6000

A_Factor=230 2000.0 [s]

KeepEvery 20

KeepAtMost 6000

A_Factor=2.3 2000.0 [s]

KeepEvery 20

KeepAtMost 6000

Geometry non-spatial1833399091 See in Dashboard
(Origin: 0.0, 0.0, 0.0; Extent: 10.0, 10.0, 10.0[um])
Dimension Type Subdomain Adjacent Subvolumes Size Mapped Compartment
Compartmental Compartment Unnamed compartment

Global Parameters

Global Parameters See in Dashboard
Name Expression
F_B_binding 0.0031[uM-1.s-1]
B_kd 6.59E-4[tbd]
B_factor 5.0[tbd]
F_A_binding 3.0[uM-1.s-1]
A_kd 0.00105[tbd]
A_factor 23.0[tbd]
C_kr 0.0023[s-1]
C_kd 2.52E-7[uM]
Vm 0.31[s-1]
Kf_A 0.08[1]
Kr_A 0.012[s-1]
Kf_B 0.082[1]
Kr_B 2.21E-4[s-1]
B1_factor 1.0[tbd]
F1 1.0[tbd]
F2 2310.0[tbd]
F3 13.5[tbd]
F4 206.0[tbd]
C_kd2 1.4E-6[tbd]
F5 275.0[tbd]
C_kr1 1.0[uM-1.s-1]
C_kr2 1.0[uM-1.s-1]
C_kr3 1.0[uM-1.s-1]
C_kr4 300.0[uM-1.s-1]
C_kr5 1.0[uM-1.s-1]
F6 1408.0[tbd]
F7 1380.0[tbd]
F9 1.97[tbd]
A2_kd 0.0057[uM]