Reaction Diagram
Physiology
Universal ID's | Text Annotations |
---|---|
|
|
Reaction |
Name
Structure
|
Kinetics | Depiction |
---|
Name |
Type
Electrical (Membrane Polarity)
|
---|---|
Extracellular |
Compartment
(+) (-)
|
|
|
muscle |
Compartment
(+) (-)
|
|
|
plasma membrane |
Membrane
N/A
|
|
|
Name | Structure | BioNetGen Definition |
---|---|---|
Sion_Extracellular | Extracellular | |
|
|
|
Leak_plasma_membrane | plasma membrane | |
|
|
|
ion_Extracellular | Extracellular | |
|
|
|
K_muscle | muscle | |
|
|
|
Sion_muscle | muscle | |
|
|
|
K_Extracellular | Extracellular | |
|
|
|
Kca | plasma membrane | |
|
|
|
GluR_plasma_membrane | plasma membrane | |
|
|
|
ion_muscle | muscle | |
|
|
Name | Text Annotations | BioNetGen Definition |
---|
Name |
Type
Count
|
BioNetGen Definition |
---|
Applications
Name | Math Type | Annotation |
---|---|---|
compartment | Deterministic (ODE) Compartmental |
Application - compartment
Species | Initial Condition | Diffusion Constant | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sion_Extracellular | 100000.0 [uM] | 0.0
[um2/s] ion_Extracellular |
100000.0
[uM]
|
0.0
[um2/s] | K_Extracellular |
100000.0
[uM]
|
0.0
[um2/s] | K_muscle |
100000.0
[uM]
|
0.0
[um2/s] | Sion_muscle |
100000.0
[uM]
|
0.0
[um2/s] | ion_muscle |
100000.0
[uM]
|
0.0
[um2/s] | Leak_plasma_membrane |
0.0
[uM]
|
0.0
[um2/s] | Kca |
0.0
[uM]
|
0.0
[um2/s] | GluR_plasma_membrane |
0.0
[uM]
|
0.0
[um2/s]
|
|
Name | Reaction Mapping |
---|---|
leak | included |
GluR | included |
Kca | included |
Name | End Time | Output Options |
---|---|---|
Simulation1 | 0.2 [s] |
KeepEvery 1 KeepAtMost 5000 |
Dimension | Type | Subdomain | Adjacent Subvolumes | Size | Mapped Compartment |
---|---|---|---|---|---|
Compartmental | Compartment | plasma membrane |
Global Parameters
Name | Expression |
---|---|
gL | -0.00133[nS.um-2] |
|
|
VL | -53.4[mV] |
|
|
Gs | 500.0[nS] |
|
|
alpha | 180.0[s-1] |
|
|
Vs | -1.0[mV] |
|
|
gcs | 0.0[nS.um-2] |
|
|
Ek | -79.0[mV] |
|
|
onset | 0.1[s] |
|
|