Reaction Diagram
Physiology
| Universal ID's | Text Annotations |
|---|---|
|
|
|
| Reaction |
Name
Structure
|
Kinetics | Depiction |
|---|
| Name |
Type
Electrical (Membrane Polarity)
|
|---|---|
| Extracellular |
Compartment
(+) (-)
|
|
|
|
| muscle |
Compartment
(+) (-)
|
|
|
|
| plasma membrane |
Membrane
N/A
|
|
|
|
| Name | Structure | BioNetGen Definition |
|---|---|---|
| Sion_Extracellular | Extracellular | |
|
|
|
|
| Leak_plasma_membrane | plasma membrane | |
|
|
|
|
| ion_Extracellular | Extracellular | |
|
|
|
|
| K_muscle | muscle | |
|
|
|
|
| Sion_muscle | muscle | |
|
|
|
|
| K_Extracellular | Extracellular | |
|
|
|
|
| Kca | plasma membrane | |
|
|
|
|
| GluR_plasma_membrane | plasma membrane | |
|
|
|
|
| ion_muscle | muscle | |
|
|
|
| Name | Text Annotations | BioNetGen Definition |
|---|
| Name |
Type
Count
|
BioNetGen Definition |
|---|
Applications
| Name | Math Type | Annotation |
|---|---|---|
| compartment | Deterministic (ODE) Compartmental |
Application - compartment
| Species | Initial Condition | Diffusion Constant | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sion_Extracellular | 100000.0 [uM] | 0.0
[um2/s] | ion_Extracellular |
100000.0
[uM]
|
0.0
[um2/s] | K_Extracellular |
100000.0
[uM]
|
0.0
[um2/s] | K_muscle |
100000.0
[uM]
|
0.0
[um2/s] | Sion_muscle |
100000.0
[uM]
|
0.0
[um2/s] | ion_muscle |
100000.0
[uM]
|
0.0
[um2/s] | Leak_plasma_membrane |
0.0
[uM]
|
0.0
[um2/s] | Kca |
0.0
[uM]
|
0.0
[um2/s] | GluR_plasma_membrane |
0.0
[uM]
|
0.0
[um2/s]
|
|
| Name | Reaction Mapping |
|---|---|
| leak | included |
| GluR | included |
| Kca | included |
| Name | End Time | Output Options |
|---|---|---|
| Simulation1 | 0.2 [s] |
KeepEvery 1 KeepAtMost 5000 |
| Dimension | Type | Subdomain | Adjacent Subvolumes | Size | Mapped Compartment |
|---|---|---|---|---|---|
| Compartmental | Compartment | plasma membrane |
Global Parameters
| Name | Expression |
|---|---|
| gL | -0.00133[nS.um-2] |
|
|
|
| VL | -53.4[mV] |
|
|
|
| Gs | 500.0[nS] |
|
|
|
| alpha | 180.0[s-1] |
|
|
|
| Vs | -1.0[mV] |
|
|
|
| gcs | 0.0[nS.um-2] |
|
|
|
| Ek | -79.0[mV] |
|
|
|
| onset | 0.1[s] |
|
|
|