Dashboard

Name - NucleationMechanism

BioModel ID - 217669650

Reaction Diagram

reactionDiagram

Physiology

Universal ID's Text Annotations

Applications

Applications See in Dashboard
Name Math Type Annotation
Simulations of Sept and McCammon and this paper Deterministic (ODE) Compartmental

Application - Simulations of Sept and McCammon and this paper

Specifications(Species) - Simulations of Sept and McCammon and this paper See in Dashboard
Species Initial Condition Diffusion Constant
Monomer 0.0 [uM] 0.0 [um2/s]
Dimer 0.0 [uM] 0.0 [um2/s]
Trimer 0.0 [uM] 0.0 [um2/s]
Factin 0.0 [uM] 0.0 [um2/s]
EndsBarbed 0.0 [uM] 0.0 [um2/s]
EndsPointed 0.0 [uM] 0.0 [um2/s]
Tetramer 0.0 [uM] 0.0 [um2/s]
Specifications(Reaction) - Simulations of Sept and McCammon and this paper See in Dashboard
Name Reaction Mapping
Dimerization included
Trimerization included
AdditionToBarbedEnd included
EndFormation(BarbedAddition) included
AdditionToPointedEnd included
Tetramerization(PointedAddition) included
Tetramerization(BarbedAddition) included
EndFormation(PointedAddition) included
Simulations - Simulations of Sept and McCammon and this paper See in Dashboard
Name End Time Output Options
Sept and McCammon 1 uM 50000.0 [s]

OutputTimeStep 10.0

Sept and McCammon 2.5 uM 7450.0 [s]

OutputTimeStep 10.0

Sept and McCammon 10 uM 1000.0 [s]

OutputTimeStep 10.0

This paper 1 uM 50000.0 [s]

OutputTimeStep 10.0

This paper 2.5 uM 7450.0 [s]

OutputTimeStep 10.0

This paper 10 uM 1000.0 [s]

OutputTimeStep 10.0

7.5% pyrenyl-actin 7450.0 [s]

OutputTimeStep 10.0

15% pyrenyl-actin 7450.0 [s]

OutputTimeStep 10.0

25% pyrenyl-actin 7450.0 [s]

OutputTimeStep 10.0

50% pyrenyl-actin 7450.0 [s]

OutputTimeStep 10.0

75% pyrenyl-actin 7450.0 [s]

OutputTimeStep 10.0

100% pyrenyl-actin 7450.0 [s]

OutputTimeStep 10.0

Geometry non-spatial1610413133 See in Dashboard
(Origin: 0.0, 0.0, 0.0; Extent: 10.0, 10.0, 10.0[um])
Dimension Type Subdomain Adjacent Subvolumes Size Mapped Compartment
Compartmental Compartment Well

Global Parameters

Global Parameters See in Dashboard
Name Expression