Reaction Diagram
Physiology
| Universal ID's | Text Annotations |
|---|---|
|
|
|
| Reaction |
Name
Structure
|
Kinetics | Depiction |
|---|---|---|---|
| R |
R_degradation
c0
|
MassAction | R |
|
|
|
reaction rate (J): (Kf * R)[uM.s-1]
forward rate constant (Kf): kd_R_degrad[s-1] reverse rate constant (Kr): 0.0[uM.s-1] |
|
| R |
R_synthesis
c0
|
GeneralKinetics | R |
|
|
|
reaction rate (J): (k_R_synth * S)[uM.s-1]
|
| Name |
Type
Electrical (Membrane Polarity)
|
|---|---|
| c0 |
Compartment
(+) (-)
|
|
|
|
| Name | Structure | BioNetGen Definition |
|---|---|---|
| R | c0 | R(). |
|
|
|
|
| S | c0 | S(). |
|
|
|
| Name | Text Annotations | BioNetGen Definition |
|---|---|---|
| S | Text Annotations | S() |
|
|
|
|
| R | Text Annotations | R() |
|
|
|
| Name |
Type
Count
|
BioNetGen Definition |
|---|---|---|
| O0_S_tot |
Molecules Multimolecular |
S(). |
|
|
|
|
| O0_R_tot |
Molecules Multimolecular |
R(). |
|
|
|
Applications
| Name | Math Type | Annotation |
|---|---|---|
| Linear | Deterministic (ODE) Compartmental | cloned from 'Linear' owned by user shreyasinha28 cloned from 'Linear' owned by user ModelBrick |
Application - Linear
| Species | Initial Condition | Diffusion Constant | |||
|---|---|---|---|---|---|
| R | 0.0 [uM] | 0.0
[um2/s] | S |
t
[uM]
|
0.0
[um2/s]
|
|
| Name | Reaction Mapping |
|---|---|
| R_degradation | included |
| R_synthesis | included |
| Name | End Time | Output Options |
|---|---|---|
| Simulation0 | 3.0 [s] |
KeepEvery 1 KeepAtMost 1000 |
| Dimension | Type | Subdomain | Adjacent Subvolumes | Size | Mapped Compartment |
|---|---|---|---|---|---|
| Compartmental | Compartment | c0 |
Global Parameters
| Name | Expression |
|---|---|
| k_R_synth | 1.0[s-1] |
|
|
|
| kd_R_degrad | 5.0[s-1] |
|
|
|