Dashboard

Name - Mutual_activation

BioModel ID - 211728462

Reaction Diagram

reactionDiagram

Physiology

Universal ID's Text Annotations

Applications

Applications See in Dashboard
Name Math Type Annotation
Deterministic Deterministic (ODE) Compartmental

Application - Deterministic

Specifications(Species) - Deterministic See in Dashboard
Species Initial Condition Diffusion Constant
R 0.0 [mol] 0.0 [m2/s]
S 0.0 [mol] 0.0 [m2/s]
Ep ((2.0 * (k3 * R) * J4) / ((k4 - (k3 * R)) + (J3 * k4) + (J4 * (k3 * R)) + pow((pow(((k4 - (k3 * R)) + (J3 * k4) + (J4 * (k3 * R))),2.0) - (4.0 * (k4 - (k3 * R)) * (k3 * R) * J4)),(1.0 / 2.0)))) [mol] 0.0 [m2/s]
E (Et - Ep) [mol] 0.0 [m2/s]
Specifications(Reaction) - Deterministic See in Dashboard
Name Reaction Mapping
R_synthesis included
R_synthesis2 included
R_degradation included
E_phosphorylation included
E_dephosphorylation included
Simulations - Deterministic See in Dashboard
Name End Time Output Options
Simulation0 1.0 [s]

KeepEvery 1

KeepAtMost 1000

Assignment Rules - Deterministic See in Dashboard
Name Variable Assignment Function Expression
assignmentRule0 E (Et - Ep)
assignmentRule1 Ep ((2.0 * (k3 * R) * J4) / ((k4 - (k3 * R)) + (J3 * k4) + (J4 * (k3 * R)) + pow((pow(((k4 - (k3 * R)) + (J3 * k4) + (J4 * (k3 * R))),2.0) - (4.0 * (k4 - (k3 * R)) * (k3 * R) * J4)),(1.0 / 2.0))))
Geometry Compartmental481736209 See in Dashboard
(Origin: 0.0, 0.0, 0.0; Extent: 10.0, 10.0, 10.0[m])
Dimension Type Subdomain Adjacent Subvolumes Size Mapped Compartment
Compartmental Compartment env

Global Parameters

Global Parameters See in Dashboard
Name Expression
k0 0.4[s-1]
k1 0.01[s-1]
k2 1.0[s-1]
k3 1.0[s-1]
J3 0.05[M]
k4 0.2[mol.s-1.l-1]
J4 0.05[M]
Et 1.0[M]