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Name - Yeast 3D_FRAP

BioModel ID - 124562627

Reaction Diagram

reactionDiagram

Physiology

Universal ID's	Text Annotations

Reactions See in Dashboard
Reaction	Name Structure	Kinetics	Depiction

Structures See in Dashboard
Name	Type Electrical (Membrane Polarity)
EC	Compartment (+) (-)

Cyto	Compartment (+) (-)

Nuc	Compartment (+) (-)

NM	Membrane N/A

PM	Membrane N/A

Species See in Dashboard
Name	Structure	BioNetGen Definition
DiffMol	Cyto

Molecules See in Dashboard
Name	Text Annotations	BioNetGen Definition

Observables See in Dashboard
Name	Type Count	BioNetGen Definition

Applications

Applications See in Dashboard
Name	Math Type	Annotation
01_06_2017	Deterministic (ODE) Spatial (3D)	(copied from Myo2_04_07_2017) cloned from 'nuc_1.75radius' owned by user ACowan (copied from Application0)

Application - 01_06_2017

Specifications(Species) - 01_06_2017 See in Dashboard
Species	Initial Condition	Diffusion Constant
DiffMol	(0.8 * (x < 11.7)) [uM]	10.0 [um2/s]

Specifications(Reaction) - 01_06_2017 See in Dashboard
Name	Reaction Mapping

Simulations - 01_06_2017 See in Dashboard
Name	End Time	Output Options
Simulation8	100.0 [s]	OutputTimeStep 1.0
Simulation9	100.0 [s]	OutputTimeStep 1.0

Geometry Geometry1315116102 See in Dashboard
(Origin: 0.0, 0.0, 0.0; Extent: 14.0, 4.0, 4.0[um])
Dimension	Type	Subdomain	Adjacent Subvolumes	Size	Mapped Compartment
Volume	CSGObject	subdomain2		5.550618934886217 [um3]	Nuc
Volume	CSGObject	subdomain1		98.51807261672559 [um3]	Cyto
Volume	Analytical	subdomain0		119.9313084483882 [um3]	EC
Surface		subdomain0_subdomain1_membrane	subdomain0 \| subdomain1	131.95796777841093 [um2]	PM
Surface		subdomain1_subdomain2_membrane	subdomain1 \| subdomain2	15.044508258113671 [um2]	NM

Global Parameters

Global Parameters See in Dashboard
Name	Expression