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Name - Schott_et_al_2016 AMF Symbiosis with SWEET

BioModel ID - 116929971

Reaction Diagram

Physiology

Universal ID's	Text Annotations

Reactions See in Dashboard
Reaction	Name Structure	Kinetics	Depiction
Pi_f+H_fPi_apo+H_apo	H_P_f_Co_Transport fungus membrane	GeneralKinetics	Pi_f+H_fPi_apo+H_apo
		reaction rate (J): (I_HPf * (Voltage_fungus_membrane - (25.0 * log((H_apo * H_apo * Pi_apo / (H_f * H_f * Pi_f))))))[molecules.um-2.s-1] inward current density (I): ((netValence * _F_ * J) * unitFactor)[pA.um-2] net charge valence (netValence): -1.0[1] electrical unit factor (unitFactor): (1.0 / 6.02214179E11)[pA.s.mol.molecules-1.C-1] user defined (I_HPf): (E * number_transporters)[molecules.um-2.s-1.mV-1] user defined (E): 1.0[1]
Pi_P+H_PPi_apo+H_apo	H_P_p_Co_Transport Plant_Membrane	GeneralKinetics	Pi_P+H_PPi_apo+H_apo
		reaction rate (J): (I_HPP * (Voltage_Plant_Membrane - (25.0 * log((H_apo * H_apo * Pi_apo / (H_P * H_P * Pi_P))))))[molecules.um-2.s-1] inward current density (I): ((netValence * _F_ * J) * unitFactor)[pA.um-2] net charge valence (netValence): -1.0[1] electrical unit factor (unitFactor): (1.0 / 6.02214179E11)[pA.s.mol.molecules-1.C-1] user defined (I_HPP): (B * number_transporters)[molecules.um-2.s-1.mV-1] user defined (B): 1.0[1]
C_f+H_fC_apo+H_apo	H_C_f_Co_Transport fungus membrane	GeneralKinetics	C_f+H_fC_apo+H_apo
		reaction rate (J): (I_HSf * (Voltage_fungus_membrane - (25.0 * log((H_apo * C_apo / (H_f * C_f))))))[molecules.um-2.s-1] inward current density (I): ((netValence * _F_ * J) * unitFactor)[pA.um-2] net charge valence (netValence): -1.0[1] electrical unit factor (unitFactor): (1.0 / 6.02214179E11)[pA.s.mol.molecules-1.C-1] user defined (I_HSf): (D * number_transporters)[molecules.um-2.s-1.mV-1] user defined (D): 1.0[1]
C_P+H_PH_apo+C_apo	H_C_p_Co_Transport Plant_Membrane	GeneralKinetics	C_P+H_PH_apo+C_apo
		reaction rate (J): (I_HSP * (Voltage_Plant_Membrane - (25.0 * log((H_apo * C_apo / (H_P * C_P))))))[molecules.um-2.s-1] inward current density (I): ((netValence * _F_ * J) * unitFactor)[pA.um-2] net charge valence (netValence): -1.0[1] electrical unit factor (unitFactor): (1.0 / 6.02214179E11)[pA.s.mol.molecules-1.C-1] user defined (I_HSP): (A * number_transporters)[molecules.um-2.s-1.mV-1] user defined (A): 1.0[1]
C_PC_apo	SWEET Plant_Membrane	GeneralKinetics	C_PC_apo
		reaction rate (J): (Diff_Sweet * (C_P - C_apo))[molecules.um-2.s-1] inward current density (I): 0.0[pA.um-2] net charge valence (netValence): 1.0[1] user defined (Diff_Sweet): (M * 100.0)[molecules.um-2.s-1.uM-1] user defined (M): 1.0[molecules.um-2.s-1.uM-1]

Structures See in Dashboard
Name	Type Electrical (Membrane Polarity)
apoplast	Compartment (+) (-)

plant	Compartment (+) (-)

fungus	Compartment (+) (-)

fungus membrane	Membrane N/A

Plant_Membrane	Membrane N/A

Species See in Dashboard
Name	Structure	BioNetGen Definition
H_apo	apoplast

Pi_apo	apoplast

C_apo	apoplast

C_f	fungus

H_f	fungus

Pi_f	fungus

H_P	plant

Pi_P	plant

C_P	plant

ion_f	fungus

ion_apo	apoplast

ion_P	plant

Molecules See in Dashboard
Name	Text Annotations	BioNetGen Definition

Observables See in Dashboard
Name	Type Count	BioNetGen Definition

Applications

Applications See in Dashboard
Name	Math Type	Annotation
Application0	Deterministic (ODE) Compartmental

Application - Application0

Specifications(Species) - Application0 See in Dashboard
Species	Initial Condition	Diffusion Constant
H_apo	1.0 [uM]	0.0 [um2/s]
Pi_apo	1.0 [uM]	0.0 [um2/s]
C_apo	7.0 [uM]	0.0 [um2/s]
ion_apo	2000.0 [uM]	0.0 [um2/s]
H_P	0.1 [uM]	0.0 [um2/s]
Pi_P	1500.0 [uM]	0.0 [um2/s]
C_P	2000.0 [uM]	0.0 [um2/s]
ion_P	100000.0 [uM]	0.0 [um2/s]
C_f	1000.0 [uM]	0.0 [um2/s]
H_f	0.1 [uM]	0.0 [um2/s]
Pi_f	3000.0 [uM]	0.0 [um2/s]
ion_f	100000.0 [uM]	0.0 [um2/s]

Specifications(Reaction) - Application0 See in Dashboard
Name	Reaction Mapping
H_P_f_Co_Transport	included
H_P_p_Co_Transport	included
H_C_f_Co_Transport	included
H_C_p_Co_Transport	included
SWEET	included
Background_fungus	included
Background_Plant	included

Simulations - Application0 See in Dashboard
Name	End Time	Output Options
Simulation0	5.0 [s]	KeepEvery 1 KeepAtMost 1000

Geometry non-spatial103398121 See in Dashboard
(Origin: 0.0, 0.0, 0.0; Extent: 10.0, 10.0, 10.0[um])
Dimension	Type	Subdomain	Adjacent Subvolumes	Size	Mapped Compartment
	Compartmental	Compartment			Plant_Membrane

Global Parameters

Global Parameters See in Dashboard
Name	Expression
number_transporters	(625.0 * 2.0)[molecules.um-2.s-1.mV-1]