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Name - Pin1_2Domains(diffKds)_monovalentligand

BioModel ID - 116898345

Reaction Diagram

reactionDiagram

Physiology

Universal ID's	Text Annotations

Reactions See in Dashboard
Reaction	Name Structure	Kinetics	Depiction
A+PPA_	r0 c0	MassAction	A+PPA_
		reaction rate (J): (((Kf * A) * P) - (Kr * PA_))[uM.s-1] forward rate constant (Kf): 100.0[s-1.uM-1] reverse rate constant (Kr): 14500.0[s-1]
P+AP_A	r1 c0	MassAction	P+AP_A
		reaction rate (J): (((Kf * P) * A) - (Kr * P_A))[uM.s-1] forward rate constant (Kf): 100.0[s-1.uM-1] reverse rate constant (Kr): 42400.0[s-1]
P_A+APAA	r2 c0	MassAction	P_A+APAA
		reaction rate (J): (((Kf * P_A) * A) - (Kr * PAA))[uM.s-1] forward rate constant (Kf): 100.0[s-1.uM-1] reverse rate constant (Kr): 14500.0[s-1]
PA_+APAA	r3 c0	MassAction	PA_+APAA
		reaction rate (J): (((Kf * PA_) * A) - (Kr * PAA))[uM.s-1] forward rate constant (Kf): 0.0[s-1.uM-1] reverse rate constant (Kr): 42400.0[s-1]

Structures See in Dashboard
Name	Type Electrical (Membrane Polarity)
c0	Compartment (+) (-)

Species See in Dashboard
Name	Structure	BioNetGen Definition
P_A	c0

A	c0

PAA	c0

P	c0

PA_	c0

Molecules See in Dashboard
Name	Text Annotations	BioNetGen Definition

Observables See in Dashboard
Name	Type Count	BioNetGen Definition

Applications

Applications See in Dashboard
Name	Math Type	Annotation
Application0	Deterministic (ODE) Compartmental

Application - Application0

Specifications(Species) - Application0 See in Dashboard
Species	Initial Condition	Diffusion Constant
P_A	0.0 [uM]	0.0 [um2/s]
A	41.0 [uM]	0.0 [um2/s]
PAA	0.0 [uM]	0.0 [um2/s]
P	171.5 [uM]	0.0 [um2/s]
PA_	0.0 [uM]	0.0 [um2/s]

Specifications(Reaction) - Application0 See in Dashboard
Name	Reaction Mapping
r0	included
r1	included
r2	included
r3	included

Simulations - Application0 See in Dashboard
Name	End Time	Output Options
Pin1-FLw/p131_first titration point	1.0 [s]	KeepEvery 1 KeepAtMost 1000

Geometry non-spatial662221205 See in Dashboard
(Origin: 0.0, 0.0, 0.0; Extent: 10.0, 10.0, 10.0[um])
Dimension	Type	Subdomain	Adjacent Subvolumes	Size	Mapped Compartment
	Compartmental	Compartment			c0

Global Parameters

Global Parameters See in Dashboard
Name	Expression