Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Structures

Name
Type
Electrical
c0 Compartment (+)   (-)

Species

Name
Structure
BioNetGen Definition
Depiction
S c0 S().
R c0 R().
X c0 X().

Molecules

Name
BioNetGen Definition
DEPICTION
S S()
R R()
X X()

Observables

Name
Structure
Count
BNGL Definition
Sequence Type
DEPICTION
O0_S_tot c0 Molecules S(). Multimolecular
O0_R_tot c0 Molecules R(). Multimolecular
O0_X_tot c0 Molecules X(). Multimolecular

Applications

Specifications (Species) - PerfectlyAdapted go to Simulations

Species
Initial Condition
Diffusion Constant
S 1.0 0.0
R 0.0 0.0
X 0.0 0.0

Specifications (Reaction) - PerfectlyAdapted go to Simulations

Name
Enabled?
X_degradation included
X_synthesis included
R_synthesis included
R_degradation included

Simulations - PerfectlyAdapted go to Specifications

Name
End Time
Output Options
Simulation0 20.0 every

Global Parameters

Name
Expression

Downloads

Format
File
VCML VCML File
BNGL
MatLab
SBML
Formatted XML
SEDML