Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Reactions
Name
Structure
Kinetics
GEF Active_GEF GEF_activation default GeneralKinetics
Active_GEF GEF GEF_inactivation default GeneralKinetics
Activator Activator_degradation default GeneralKinetics

Structures

Name
Type
Electrical
default Compartment (+)   (-)

Species

Name
Structure
Activator default
GEF default
Active_GEF default

Molecules

Name
Description
Activator Activator ()
RhoGEF RhoGEF ( Active ~no ~yes )

Observables

Name
Domain
Molecular Type
Sequence Type
O0_Activator_tot Molecules Activator Multimolecular
O0_RhoGEF_tot Molecules RhoGEF Multimolecular

Applications

Specifications (Species) - Canonical Application go to Simulations

Species
Initial Condition
Diffusion Constant
Activator 1.0 0.0
GEF 0.31 0.0
Active_GEF 0.0 0.0

Specifications (Reaction) - Canonical Application go to Simulations

Name
Enabled?
GEF_activation included
GEF_inactivation included
Activator_degradation included

Simulations - Canonical Application go to Specifications

Name
End Time
Output Options
Simulation0 600.0 every

Global Parameters

Name
Expression
k3 0.5[min-1]
k2 0.1[min-1]
kcatGEF 5.64[min-1]
KmGEFRho 24.5[umol.l-1]
KmGEFGDI 1.0[umol.l-1]
k1 1.0[l.umol-1.min-1]

Downloads

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BNGL
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Formatted XML
SEDML
Deterministic XML