Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Structures

Name
Type
Electrical
env Compartment (+)   (-)

Species

Name
Structure
R env
S env
Ep env
E env

Molecules

Name
Description
R R ()
S S ()
E E ( mod ~P ~U )

Observables

Name
Domain
Molecular Type
Sequence Type
O0_R_tot Molecules R Multimolecular
O0_S_tot Molecules S Multimolecular
O0_E_tot Molecules E Multimolecular

Applications

Specifications (Species) - Deterministic go to Simulations

Species
Initial Condition
Diffusion Constant
R 0.0 0.0
S 0.0 0.0
Ep ((2.0 * (k3 * R) * J4) / ((k4 - (k3 * R)) + (J3 * k4) + (J4 * (k3 * R)) + pow((pow(((k4 - (k3 * R)) + (J3 * k4) + (J4 * (k3 * R))),2.0) - (4.0 * (k4 - (k3 * R)) * (k3 * R) * J4)),(1.0 / 2.0)))) 0.0
E (Et - Ep) 0.0

Specifications (Reaction) - Deterministic go to Simulations

Name
Enabled?
R_synthesis included
R_synthesis2 included
R_degradation included
E_phosphorylation included
E_dephosphorylation included

Simulations - Deterministic go to Specifications

Name
End Time
Output Options
Simulation0 1.0 every

Global Parameters

Name
Expression
k0 0.4[s-1]
k1 0.01[s-1]
k2 1.0[s-1]
k3 1.0[s-1]
J3 0.05[M]
k4 0.2[mol.s-1.l-1]
J4 0.05[M]
Et 1.0[M]

Downloads

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SEDML
Deterministic XML