Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Reactions
Name
Structure
Kinetics
R PR protein_phos c0 HMMIrreversible
PR R protein_dephos c0 HMMIrreversible

Reaction Name: protein_phos

Universal ID's

Text Annotations

Reaction Name: protein_dephos

Universal ID's

Text Annotations

Reaction Name: protein_phos

Expressions

reaction rate

((Vmax * R) / (Km + R)) [uM.s-1]

Km (1/2 max)

1.0 [uM]

max reaction rate

S [uM.s-1]

Reaction Name: protein_dephos

Expressions

reaction rate

((Vmax * PR) / (Km + PR)) [uM.s-1]

Km (1/2 max)

1.0 [uM]

max reaction rate

1.0 [uM.s-1]

Structures

Name
Type
Electrical
c0 Compartment (+)   (-)

Structure Name: c0

Universal ID's

Text Annotations

Species

Name
Structure
S c0
R c0
PR c0

Species Name: S

Universal ID's

Text Annotations

Species Name: R

Universal ID's

Text Annotations

Species Name: PR

Universal ID's

Text Annotations

Molecules

Name
Description
R R ( mod ~P ~U )
S S ()

Molucule Name: R

Universal ID's

Text Annotations

Molucule Name: S

Universal ID's

Text Annotations

Observables

Name
Domain
Molecular Type
Sequence Type
O0_R_tot Molecules R Multimolecular
O0_S_tot Molecules S Multimolecular

Observables Name: O0_R_tot

Universal ID's

Text Annotations

Observables Name: O0_S_tot

Universal ID's

Text Annotations

Applications

Name
Properties Math Type
Sigmoidal Specs - Species
Specs - Reaction
Simulations

Application Name: Sigmoidal

Text Annotations

Annotations will come here

Universal ID's

RFID | pubmed

Specifications (Species) - Sigmoidal go to Simulations

Species
Initial Condition
Diffusion Constant
S t 0.0
R 1.0 0.0
PR 0.0 0.0

Specifications (Reaction) - Sigmoidal go to Simulations

Name
Enabled?
protein_phos included
protein_dephos included

Simulations - Sigmoidal go to Specifications

Name
End Time
Output Options
Simulation0 5.0 every

Simulation Name: Simulation0

Universal ID's

Text Annotations

Global Parameters

Name
Expression

Downloads

Format
File
BNGL
Metlab
SBML
Formatted XML
SEDML
Deterministic XML