Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Reactions
Name
Structure
Kinetics
R RP R_phosphorylation c0 GeneralKinetics
RP R R_dephosphorylation c0 MassAction

Reaction Name: R_phosphorylation

Universal ID's

Text Annotations

Reaction Name: R_dephosphorylation

Universal ID's

Text Annotations

Reaction Name: R_phosphorylation

Expressions

reaction rate

(kf * R * S) [uM.s-1]

user defined

1.0 [s-1.uM-1]

Reaction Name: R_dephosphorylation

Expressions

reaction rate

((Kf * RP) - (Kr * R)) [uM.s-1]

forward rate constant

1.0 [s-1]

reverse rate constant

0.0 [s-1]

Structures

Name
Type
Electrical
c0 Compartment (+)   (-)

Structure Name: c0

Universal ID's

Text Annotations

Species

Name
Structure
R c0
RP c0
S c0

Species Name: R

Universal ID's

Text Annotations

Species Name: RP

Universal ID's

Text Annotations

Species Name: S

Universal ID's

Text Annotations

Molecules

Name
Description
R R ( mod ~P ~U )
S S ()

Molucule Name: R

Universal ID's

Text Annotations

Molucule Name: S

Universal ID's

Text Annotations

Observables

Name
Domain
Molecular Type
Sequence Type
O0_R_tot Molecules R Multimolecular
O0_S_tot Molecules S Multimolecular

Observables Name: O0_R_tot

Universal ID's

Text Annotations

Observables Name: O0_S_tot

Universal ID's

Text Annotations

Applications

Name
Properties Math Type
Hyperbolic Specs - Species
Specs - Reaction
Simulations

Application Name: Hyperbolic

Text Annotations

Annotations will come here

Universal ID's

RFID | pubmed

Specifications (Species) - Hyperbolic go to Simulations

Species
Initial Condition
Diffusion Constant
R 1.0 0.0
RP 0.0 0.0
S t 0.0

Specifications (Reaction) - Hyperbolic go to Simulations

Name
Enabled?
R_phosphorylation included
R_dephosphorylation included

Simulations - Hyperbolic go to Specifications

Name
End Time
Output Options
Simulation0 10.0 every

Simulation Name: Simulation0

Universal ID's

Text Annotations

Global Parameters

Name
Expression

Downloads

Format
File
BNGL
Metlab
SBML
Formatted XML
SEDML
Deterministic XML