Physiology

Reaction Diagram

reactionDiagram

Cross-References

Annotations

Reactions

Reactions
Name
Structure
Kinetics
R PR protein_phos c0 HMMIrreversible
PR R protein_dephos c0 HMMIrreversible

Structures

Name
Type
Electrical
c0 Compartment (+)   (-)

Species

Name
Structure
BioNetGen Definition
Depiction
S c0 S().
R c0 R(mod~U!-,).
PR c0 R(mod~P!-,).

Molecules

Name
BioNetGen Definition
DEPICTION
R R(mod~P~U,)
S S()

Observables

Name
Structure
Count
BNGL Definition
Sequence Type
DEPICTION
O0_R_tot c0 Molecules R(mod!?,). Multimolecular
O0_S_tot c0 Molecules S(). Multimolecular

Applications

Specifications (Species) - Sigmoidal go to Simulations

Species
Initial Condition
Diffusion Constant
S t 0.0
R 1.0 0.0
PR 0.0 0.0

Specifications (Reaction) - Sigmoidal go to Simulations

Name
Enabled?
protein_phos included
protein_dephos included

Simulations - Sigmoidal go to Specifications

Name
End Time
Output Options
Simulation0 5.0 every

Global Parameters

Name
Expression

Downloads

Format
File
VCML VCML File
BNGL
MatLab
SBML
Formatted XML
SEDML